A Preliminary Study on Cell Motility Analysis From Phase-Contrast Microscopy Image Series

dc.contributor.author Kayan, Emre
dc.contributor.author Kavuşan, Tarık
dc.contributor.author Önal, Sevgi
dc.contributor.author Pesen Okvur, Devrim
dc.contributor.author Yalçın Özuysal, Özden
dc.contributor.author Töreyin, Behçet Uğur
dc.contributor.author Ünay, Devrim
dc.date.accessioned 2021-12-02T18:16:10Z
dc.date.available 2021-12-02T18:16:10Z
dc.date.issued 2020
dc.description 2020 Medical Technologies Congress (TIPTEKNO) -- NOV 19-20, 2020 -- ELECTR NETWORK en_US
dc.description.abstract Analyses of morphology, polarity, and motility of cells is important for cell biology research such as metastatic and invasive capacity of cells, wound healing, and embryonic development. Automation of such analyses using image series of phase-contrast optical microscopy, which allows label-free imaging of live cells in their living environment, is a need. With this purpose, in this study image series of a cell motility experiment is manually annotated, and an automation algorithm realizing motion and shape analyses of cells using the annotated data is developed. In addition, due to the low number of annotated data at hand, a U-Net based solution is devised for automated segmentation of the cells and its performance is evaluated. en_US
dc.identifier.isbn 9781728180731
dc.identifier.scopus 2-s2.0-85099471929
dc.identifier.uri https://hdl.handle.net/11147/11784
dc.language.iso tr en_US
dc.publisher IEEE en_US
dc.relation.ispartof 2020 Medical Technologies Congress (Tiptekno) en_US
dc.rights info:eu-repo/semantics/openAccess en_US
dc.subject Cell motility en_US
dc.subject Phase-contrast optical microscopy en_US
dc.subject Image processing en_US
dc.subject Deep learning en_US
dc.title A Preliminary Study on Cell Motility Analysis From Phase-Contrast Microscopy Image Series en_US
dc.type Conference Object en_US
dspace.entity.type Publication
gdc.author.id 0000-0001-8333-4193
gdc.author.id 0000-0002-9882-132X
gdc.author.id 0000-0003-0552-368X
gdc.author.institutional Önal, Sevgi
gdc.author.institutional Pesen Okvur, Devrim
gdc.author.institutional Yalçın Özuysal, Özden
gdc.author.wosid Onal, Sevgi/AAO-8438-2021
gdc.coar.access open access
gdc.coar.type text::conference output
gdc.description.department İzmir Institute of Technology. Molecular Biology and Genetics en_US
gdc.description.publicationcategory Konferans Öğesi - Uluslararası - Kurum Öğretim Elemanı en_US
gdc.identifier.wos WOS:000659419900100
gdc.index.type WoS
gdc.index.type Scopus
gdc.scopus.citedcount 1
gdc.wos.citedcount 0
relation.isAuthorOfPublication.latestForDiscovery 8e1732f3-2bf8-4231-b7a4-7e94b485eb97
relation.isOrgUnitOfPublication.latestForDiscovery 9af2b05f-28ac-4013-8abe-a4dfe192da5e

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