Transcriptomic Analysis of Selenium Accumulation in Puccinellia Distans (jacq.) Parl., a Boron Hyperaccumulator

dc.contributor.author Kök, Aysu Başak
dc.contributor.author Mungan, Mehmet Direnç
dc.contributor.author Doğanlar, Sami
dc.contributor.author Frary, Anne
dc.coverage.doi 10.1016/j.chemosphere.2019.125665
dc.date.accessioned 2020-07-18T08:34:03Z
dc.date.available 2020-07-18T08:34:03Z
dc.date.issued 2020
dc.description.abstract Selenium (Se) is present in a wide variety of natural and man-made materials on Earth. Plants are able to tolerate and (hyper)accumulate Se to different extents. In fact, some species can tolerate and accumulate multiple elements. Puccinellia distans (P. distans), weeping alkali grass, is known to hyperaccumulate extreme concentrations of boron and tolerate high levels of salinity, therefore, we investigated the Se accumulation and tolerance capacities of this species. In addition, P. distans' Se tolerance mechanism was studied using a transcriptomic approach. The results of this study indicated that, when grown in a hydroponic system containing 80 or 120 mu M Se, P. distans shoots accumulated from 1500 to 2500-fold more Se than plants grown without the element. Thus, P. distans was discovered to be a novel Se accumulator plant. RNA sequencing results and biochemical analyses helped to shed light on the Se tolerance and accumulation mechanism of P. distans. Here, we suggest that upregulation of Se assimilation and stress response genes may be due to induction of jasmonic acid signaling. In addition, we propose that the cell wall may play an important role in restriction of Se movement to the cytoplasm. Also, we hypothesize that Se accumulates in cells by sequestration of selenate in the vacuole. (C) 2019 Elsevier Ltd. All rights reserved. en_US
dc.identifier.doi 10.1016/j.chemosphere.2019.125665 en_US
dc.identifier.issn 0045-6535
dc.identifier.issn 1879-1298
dc.identifier.scopus 2-s2.0-85076716839
dc.identifier.uri https://doi.org/10.1016/j.chemosphere.2019.125665
dc.identifier.uri https://hdl.handle.net/11147/8846
dc.language.iso en en_US
dc.publisher Elsevier en_US
dc.relation.ispartof Chemosphere en_US
dc.rights info:eu-repo/semantics/openAccess en_US
dc.subject RNA sequencing en_US
dc.subject Selenium en_US
dc.subject KEGG pathway en_US
dc.subject Annotation en_US
dc.subject Phytoremediation en_US
dc.subject Tolerance en_US
dc.title Transcriptomic Analysis of Selenium Accumulation in Puccinellia Distans (jacq.) Parl., a Boron Hyperaccumulator en_US
dc.type Article en_US
dspace.entity.type Publication
gdc.author.institutional Kök, Aysu Başak
gdc.author.institutional Mungan, Mehmet Direnç
gdc.author.institutional Doğanlar, Sami
gdc.author.institutional Frary, Anne
gdc.bip.impulseclass C4
gdc.bip.influenceclass C5
gdc.bip.popularityclass C4
gdc.coar.access open access
gdc.coar.type text::journal::journal article
gdc.collaboration.industrial false
gdc.description.department İzmir Institute of Technology. Molecular Biology and Genetics en_US
gdc.description.publicationcategory Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı en_US
gdc.description.scopusquality Q1
gdc.description.volume 245 en_US
gdc.description.wosquality Q1
gdc.identifier.openalex W2995603941
gdc.identifier.pmid 31877459
gdc.identifier.wos WOS:000521513100083
gdc.index.type WoS
gdc.index.type Scopus
gdc.index.type PubMed
gdc.oaire.diamondjournal false
gdc.oaire.impulse 12.0
gdc.oaire.influence 3.0106433E-9
gdc.oaire.isgreen true
gdc.oaire.keywords Selenium
gdc.oaire.keywords Hydroponics
gdc.oaire.keywords Sequence Analysis, RNA
gdc.oaire.keywords Gene Expression Profiling
gdc.oaire.keywords Cyclopentanes
gdc.oaire.keywords Drug Tolerance
gdc.oaire.keywords Oxylipins
gdc.oaire.keywords Selenic Acid
gdc.oaire.keywords Poaceae
gdc.oaire.keywords Boron
gdc.oaire.popularity 1.28707915E-8
gdc.oaire.publicfunded false
gdc.oaire.sciencefields 0301 basic medicine
gdc.oaire.sciencefields 0303 health sciences
gdc.oaire.sciencefields 03 medical and health sciences
gdc.openalex.collaboration National
gdc.openalex.fwci 1.90000313
gdc.openalex.normalizedpercentile 0.81
gdc.opencitations.count 13
gdc.plumx.crossrefcites 12
gdc.plumx.mendeley 25
gdc.plumx.pubmedcites 5
gdc.plumx.scopuscites 14
gdc.scopus.citedcount 14
gdc.wos.citedcount 12
relation.isAuthorOfPublication.latestForDiscovery a6123680-d43f-438c-ae4d-e7fad6d4a0d8
relation.isOrgUnitOfPublication.latestForDiscovery 9af2b05f-28ac-4013-8abe-a4dfe192da5e

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