Proteolysis of Micellar Β-Casein by Trypsin: Secondary Structure Characterization and Kinetic Modeling at Different Enzyme Concentrations

dc.contributor.author Vorob’ev, Mikhail M.
dc.contributor.author Açıkgöz, Burçin Dersu
dc.contributor.author Güler, Günnur
dc.contributor.author Golovanov, Andrey V.
dc.contributor.author Sinitsyna, Olga V.
dc.date.accessioned 2023-03-08T10:49:52Z
dc.date.available 2023-03-08T10:49:52Z
dc.date.issued 2023
dc.description This work was supported by both RFBR (№ 20-53-46006 to M.M. Vorobev) and TÜBİTAK-2532 (№ 119N423 to G. Güler). The work of the Russian team was supported by the Ministry of Science and Higher Education of the Russian Federation (Contract No. 075-03-2023-642). en_US
dc.description.abstract Tryptic proteolysis of protein micelles was studied using β-casein (β-CN) as an example. Hydrolysis of specific peptide bonds in β-CN leads to the degradation and rearrangement of the original micelles and the formation of new nanoparticles from their fragments. Samples of these nanoparticles dried on a mica surface were characterized by atomic force microscopy (AFM) when the proteolytic reaction had been stopped by tryptic inhibitor or by heating. The changes in the content of β-sheets, α-helices, and hydrolysis products during proteolysis were estimated by using Fourier-transform infrared (FTIR) spectroscopy. In the current study, a simple kinetic model with three successive stages is proposed to predict the rearrangement of nanoparticles and the formation of proteolysis products, as well as changes in the secondary structure during proteolysis at various enzyme concentrations. The model determines for which steps the rate constants are proportional to the enzyme concentration, and in which intermediate nano-components the protein secondary structure is retained and in which it is reduced. The model predictions were in agreement with the FTIR results for tryptic hydrolysis of β-CN at different concentrations of the enzyme. en_US
dc.identifier.doi 10.3390/ijms24043874
dc.identifier.issn 1661-6596 en_US
dc.identifier.issn 1661-6596
dc.identifier.issn 1422-0067
dc.identifier.scopus 2-s2.0-85149028561
dc.identifier.uri https://doi.org/10.3390/ijms24043874
dc.identifier.uri https://hdl.handle.net/11147/13211
dc.language.iso en en_US
dc.publisher MDPI en_US
dc.relation.ispartof International Journal of Molecular Sciences en_US
dc.rights info:eu-repo/semantics/openAccess en_US
dc.subject Atomic force microscopy en_US
dc.subject Beta-casein en_US
dc.subject Fourier-transform infrared spectroscopy en_US
dc.subject Proteolysis kinetics en_US
dc.title Proteolysis of Micellar Β-Casein by Trypsin: Secondary Structure Characterization and Kinetic Modeling at Different Enzyme Concentrations en_US
dc.type Article en_US
dspace.entity.type Publication
gdc.author.id 0000-0002-8485-7372
gdc.author.id 0000-0002-8485-7372 en_US
gdc.author.institutional Güler, Günnur
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gdc.bip.influenceclass C5
gdc.bip.popularityclass C4
gdc.coar.access open access
gdc.coar.type text::journal::journal article
gdc.collaboration.industrial false
gdc.contributor.affiliation A. N. Nesmeyanov Institute of Organoelement Compounds of the Russian Academy of Sciences en_US
gdc.contributor.affiliation İzmir Ekonomi Üniversitesi en_US
gdc.contributor.affiliation 01. Izmir Institute of Technology en_US
gdc.contributor.affiliation A. N. Nesmeyanov Institute of Organoelement Compounds of the Russian Academy of Sciences en_US
gdc.contributor.affiliation A. N. Nesmeyanov Institute of Organoelement Compounds of the Russian Academy of Sciences en_US
gdc.description.department İzmir Institute of Technology. Physics en_US
gdc.description.issue 4 en_US
gdc.description.publicationcategory Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı en_US
gdc.description.scopusquality Q2
gdc.description.volume 24 en_US
gdc.description.wosquality Q1
gdc.identifier.openalex W4320920261
gdc.identifier.pmid 36835285
gdc.identifier.wos WOS:000939019400001
gdc.index.type WoS
gdc.index.type Scopus
gdc.index.type PubMed
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gdc.oaire.diamondjournal false
gdc.oaire.impulse 5.0
gdc.oaire.influence 2.7482887E-9
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gdc.oaire.keywords atomic force microscopy
gdc.oaire.keywords Hydrolysis
gdc.oaire.keywords Fourier-transform infrared spectroscopy
gdc.oaire.keywords Caseins
gdc.oaire.keywords beta-casein
gdc.oaire.keywords Article
gdc.oaire.keywords trypsin
gdc.oaire.keywords Kinetics
gdc.oaire.keywords Proteolysis
gdc.oaire.keywords Trypsin
gdc.oaire.keywords proteolysis kinetics
gdc.oaire.keywords Micelles
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gdc.oaire.sciencefields 0106 biological sciences
gdc.oaire.sciencefields 04 agricultural and veterinary sciences
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gdc.oaire.sciencefields 0404 agricultural biotechnology
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gdc.opencitations.count 4
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