Structural and Functional Characterization of Solution, Gel, and Aggregated Forms of Trypsin in Organic Solvent-Assisted and Ph-Induced Phase Changes

dc.contributor.author Ceylan, Çağatay
dc.contributor.author Karaçiçek, Bilge
dc.coverage.doi 10.5505/tjb.2015.65002
dc.date.accessioned 2017-05-16T13:26:13Z
dc.date.available 2017-05-16T13:26:13Z
dc.date.issued 2015
dc.description.abstract In this study the effect of three different physicochemical parameters on pHtriggered gelation and aggregation of bovine pancreatic trypsin changes and structural and functional changes in these changes in alcohol-water mixtures were studied. Methods: Trypsin gelation times were studied using inverted tube method. Trypsin stability was studied using trypsin enzyme assay. Protein secondary structural changes were monitored using FTIR spectroscopy. Gel and aggregate macrostructures and morphologies were viewed using Scanning Electron Microscopy. Results: The solution phase was observed in the absence of both NaOH and CaCl2. The gel phase was observed in the absence of the either. The aggregate phase was observed in the presence of the both agents all depending on trypsin concentrations used. Trypsin stability studies showed that there were a nearly 53 and 32% specific activity losses after the gelation and aggregation processes. According to FTIR studies β–sheet structure in 1637 cm-1 band disappeared in trypsin gel and trypsin aggregates. Increases in α–helix structure in 1651 cm-1 in trypsin gel and aggregates were observed. Iodoacetamide delayed the gelation and prevented the aggregation indicating the importance of intermolecular disulfides in the both processes. Conclusion: Trypsin gelation was caused by the denaturation of the protein three dimensional structures. The gel and aggregate formation indicates a secondary structural change towards α–helix structure formation at the expense of β–sheet structure and formation of intermolecular disulfide bonds. en_US
dc.description.abstract Amaç: Bu çalışmada alkol-su karışımlarında pH tarafından tetiklenen sığır pankreatik tripsin jelleşmesi ve agregasyonu faz değişiklikleri üzerine üç değişik fizikokimyasal değişkenin yapısal ve fonksiyonel etkileri çalışılmıştır. Metod: Tripsin jelleşmesi ters tüp metodu ile çalışılmıştır. Tripsin stabilitesi tripsin enzim aktivitesi tayiniyle çalışılmıştır. Protein ikinci yapı değişiklikleri FTIR spektroskopisi metodu ile gözlenmiştir. Jel ve agregat makroyapıları ve morfolojileri taramalı elektron mikroskopisi yöntemiyle incelenmiştir. en_US
dc.description.sponsorship IZTECH Scientific Research Council (BAP) (2011IYTE11--2008IYTE22) en_US
dc.identifier.citation Ceylan, Ç., and Karaçiçek, B. (2015). Structural and functional characterization of solution, gel, and aggregated forms of trypsin in organic solvent-assisted and pH-induced phase changes. Turkish Journal of Biochemistry, 40(1), 81-87. doi:10.5505/tjb.2015.65002 en_US
dc.identifier.doi 10.5505/tjb.2015.65002 en_US
dc.identifier.doi 10.5505/tjb.2015.65002
dc.identifier.issn 0250-4685
dc.identifier.issn 1303-829X
dc.identifier.scopus 2-s2.0-84923030165
dc.identifier.uri http://doi.org/10.5505/tjb.2015.65002
dc.identifier.uri https://hdl.handle.net/11147/5526
dc.identifier.uri https://search.trdizin.gov.tr/yayin/detay/206316
dc.language.iso en en_US
dc.publisher Türk Biyokimya Derneği en_US
dc.relation.ispartof Turkish Journal of Biochemistry en_US
dc.rights info:eu-repo/semantics/openAccess en_US
dc.subject Aggregation en_US
dc.subject FTIR en_US
dc.subject Gelation en_US
dc.subject Trypsin en_US
dc.subject Phase transition en_US
dc.title Structural and Functional Characterization of Solution, Gel, and Aggregated Forms of Trypsin in Organic Solvent-Assisted and Ph-Induced Phase Changes en_US
dc.title.alternative Trpsinin Çözelti, Jel ve Agregat Formlarının Organik Çözgen İçeren ve Ph-tektiklenmiş Faz Geçişlerinde Yapısal ve Fonksiyonel İncelenmesi en_US
dc.type Article en_US
dspace.entity.type Publication
gdc.author.institutional Ceylan, Çağatay
gdc.author.institutional Karaçiçek, Bilge
gdc.author.yokid 45775
gdc.bip.impulseclass C5
gdc.bip.influenceclass C5
gdc.bip.popularityclass C5
gdc.coar.access open access
gdc.coar.type text::journal::journal article
gdc.collaboration.industrial false
gdc.description.department İzmir Institute of Technology. Food Engineering en_US
gdc.description.endpage 87 en_US
gdc.description.issue 1 en_US
gdc.description.publicationcategory Makale - Ulusal Hakemli Dergi - Kurum Öğretim Elemanı en_US
gdc.description.scopusquality Q4
gdc.description.startpage 81 en_US
gdc.description.volume 40 en_US
gdc.description.wosquality Q4
gdc.identifier.openalex W2322049632
gdc.identifier.trdizinid 206316
gdc.identifier.wos WOS:000351543800009
gdc.index.type WoS
gdc.index.type Scopus
gdc.index.type TR-Dizin
gdc.oaire.accesstype GOLD
gdc.oaire.diamondjournal false
gdc.oaire.impulse 2.0
gdc.oaire.influence 2.7142464E-9
gdc.oaire.isgreen true
gdc.oaire.keywords Aggregation
gdc.oaire.keywords Gelation
gdc.oaire.keywords FTIR
gdc.oaire.keywords Trypsin
gdc.oaire.keywords Phase transition
gdc.oaire.popularity 8.1829427E-10
gdc.oaire.publicfunded false
gdc.openalex.collaboration National
gdc.openalex.fwci 0.28692079
gdc.openalex.normalizedpercentile 0.61
gdc.opencitations.count 0
gdc.plumx.mendeley 2
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gdc.scopus.citedcount 2
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