Mitotyping of Random Bred Cats and Pure Breed Cats (turkish Angora and Turkish Van) Using Non-Repetitive Mitochondrial Dna Control Region

dc.contributor.author Bilgen, Nuket
dc.contributor.author Guvendi, Mervenur
dc.contributor.author Sezgin, Efe
dc.contributor.author Can, Huseyin
dc.contributor.author Koseoglu, Ahmet Efe
dc.contributor.author Alak, Sedef Erkunt
dc.contributor.author Un, Cemal
dc.date.accessioned 2023-11-11T08:56:14Z
dc.date.available 2023-11-11T08:56:14Z
dc.date.issued 2024
dc.description Sezgin, Efe/0000-0002-8000-7485; Doskaya, Mert/0000-0001-6868-008X; ERKUNT ALAK, Sedef/0000-0001-8563-1239 en_US
dc.description.abstract The Fertile Crescent appears to be the most plausible region where the domestication of cats commenced through a mutually beneficial relationship between wild cats and early agrarian societies. These domesticated cats then journeyed across the globe mirroring the paths of human migration. An examination of mitochondrial DNA (mtDNA) control region-based mitotyping suggested that a significant majority, exceeding 80%, of globally sampled random-bred and pure-bred cats could be categorized into 12 predominant mitotypes. However, the extent of mitotype diversity within random-bred cats from regions proximate to the Fertile Crescent remains inadequately explored. In light of this we aimed to investigate the mitotype diversity in random bred cats sampled from various regions across Turkey. Additionally, we sought to establish a comparison with the mito-type profiles of locally recognized pure breeds, namely the Turkish Angora and Turkish Van. To unravel their evolutionary narratives, we engaged in comprehensive population genetics analyses at both the individual and mitotype-based levels. Our study encompassed a sample size of 240 specimens, forming the basis for both mitotyping and population genetics scrutiny. Our analysis yielded the identification of nine 'universal' mitotypes (A-J), alongside an 'outlier' mitotype group I. Notably mitotypes A and D emerged as particularly prevalent in contrast to the lesser occurrence mitotypes C, G, and H. With the realm of random bred cats the structure of haplotypes exhibited remarkable diversity presenting distinctions from Turkish Angora and Van breeds. Nucleotide diversity was higher compared to previous reports from Turkey and was one of the highest among reported world cat population estimates. Intriguingly, our investigations did not unveil any pronounced instances of strong selection, population expansions or contractions within any specific population or mitotype. To conclude, our study represents a pioneering effort in uncovering the mitotype profiles and haplotype structures inherent to both random-bred and pure breed cats in Turkey. This endeavor not only broadens our understanding of the feline genetic landscape within the region but also lays the foundation for future inquiries into the evolutionary trajectories and genetic legacies of these feline populations. en_US
dc.description.sponsorship Scientific and Technological Research Council of Turkey (TUEBITAK) [218Z105, 114O768] en_US
dc.description.sponsorship This study was partially supported by a project given by the Scientific and Technological Research Council of Turkey (TUEBITAK) (Project number: 218Z105) and another project given by the Scientific and Technological Research Council of Turkey (TUEBITAK) (Project number: 114O768). The funding bodies played no role in the design of the study and collection, analysis, and interpretation of data and in writing the manuscript. en_US
dc.identifier.doi 10.1016/j.gene.2023.147849
dc.identifier.issn 0378-1119
dc.identifier.issn 1879-0038
dc.identifier.scopus 2-s2.0-85173259418
dc.identifier.uri https://doi.org/10.1016/j.gene.2023.147849
dc.identifier.uri https://hdl.handle.net/11147/14010
dc.language.iso en en_US
dc.publisher Elsevier en_US
dc.relation.ispartof Gene
dc.rights info:eu-repo/semantics/closedAccess en_US
dc.subject Mitotyping en_US
dc.subject Sequencing en_US
dc.subject Mtdna Cr en_US
dc.subject Turkey en_US
dc.title Mitotyping of Random Bred Cats and Pure Breed Cats (turkish Angora and Turkish Van) Using Non-Repetitive Mitochondrial Dna Control Region en_US
dc.type Article en_US
dspace.entity.type Publication
gdc.author.id 0000-0002-8000-7485
gdc.author.id ERKUNT ALAK, Sedef/0000-0001-8563-1239
gdc.author.id Doskaya, Mert/0000-0001-6868-008X
gdc.author.id Sezgin, Efe/0000-0002-8000-7485
gdc.author.id 0000-0002-8000-7485 en_US
gdc.author.id ERKUNT ALAK, Sedef / 0000-0001-8563-1239 en_US
gdc.author.id Doskaya, Mert / 0000-0001-6868-008X en_US
gdc.author.id Sezgin, Efe / 0000-0002-8000-7485 en_US
gdc.author.institutional Sezgin, Efe
gdc.author.wosid Koseoglu, Ahmet/AAG-5364-2021
gdc.author.wosid Can, Hüseyin/AAG-3152-2020
gdc.author.wosid Erkunt Alak, Sedef/AAG-9556-2020
gdc.author.wosid Bilgen, Nuket/AAB-3118-2020
gdc.author.wosid Sezgin, Efe/B-8418-2012
gdc.author.wosid Doskaya, Mert/W-4682-2017
gdc.bip.impulseclass C5
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gdc.coar.access metadata only access
gdc.coar.type text::journal::journal article
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gdc.description.department İzmir Institute of Technology en_US
gdc.description.departmenttemp [Bilgen, Nuket] Ankara Univ, Fac Vet Med, Dept Anim Genet, TR-06110 Ankara, Turkiye; [Guvendi, Mervenur; Can, Huseyin; Alak, Sedef Erkunt; Un, Cemal] Ege Univ, Fac Sci, Dept Biol Mol Biol Sect, Izmir, Turkiye; [Sezgin, Efe] Izmir Inst Technol, Dept Food Engn, Izmir, Turkiye; [Koseoglu, Ahmet Efe] Biruni Univ, Fac Engn & Nat Sci, Dept Mol Biol & Genet, Istanbul, Turkiye; [Doskaya, Mert] Ege Univ, Fac Med, Dept Parasitol, Izmir, Turkiye en_US
gdc.description.publicationcategory Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı en_US
gdc.description.scopusquality Q2
gdc.description.volume 892 en_US
gdc.description.woscitationindex Science Citation Index Expanded
gdc.description.wosquality Q3
gdc.identifier.openalex W4387117001
gdc.identifier.pmid 37776989
gdc.identifier.wos WOS:001088562800001
gdc.index.type WoS
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gdc.oaire.keywords haplotype
gdc.oaire.keywords Turkish Van
gdc.oaire.keywords Turkey
gdc.oaire.keywords cat breed
gdc.oaire.keywords animal experiment
gdc.oaire.keywords prevalence
gdc.oaire.keywords random sample
gdc.oaire.keywords mitochondrial DNA
gdc.oaire.keywords genetic analysis
gdc.oaire.keywords DNA, Mitochondrial
gdc.oaire.keywords Article
gdc.oaire.keywords Turkey (republic)
gdc.oaire.keywords purebred cat
gdc.oaire.keywords genetic variability
gdc.oaire.keywords Databases, Genetic
gdc.oaire.keywords Sequencing
gdc.oaire.keywords Humans
gdc.oaire.keywords Animals
gdc.oaire.keywords controlled study
gdc.oaire.keywords DNA sequencing
gdc.oaire.keywords Turkish Angora
gdc.oaire.keywords mitotype
gdc.oaire.keywords locus control region
gdc.oaire.keywords nonhuman
gdc.oaire.keywords molecular evolution
gdc.oaire.keywords population genetics
gdc.oaire.keywords mitotyping
gdc.oaire.keywords nucleotide
gdc.oaire.keywords sample size
gdc.oaire.keywords Mitochondria
gdc.oaire.keywords Genetics, Population
gdc.oaire.keywords classification
gdc.oaire.keywords Cats
gdc.oaire.keywords Mitotyping
gdc.oaire.keywords genetic procedures
gdc.oaire.keywords mtDNA CR
gdc.oaire.keywords genetic profile
gdc.oaire.popularity 3.0009937E-9
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