Novel Neural Style Transfer Based Data Synthesis Method for Phase-Contrast Wound Healing Assay Images

dc.contributor.author Erdem,Y.S.
dc.contributor.author Iheme,L.O.
dc.contributor.author Uçar,M.
dc.contributor.author Özuysal,Ö.Y.
dc.contributor.author Balıkçı,M.
dc.contributor.author Morani,K.
dc.contributor.author Ünay,D.
dc.date.accessioned 2024-06-19T14:29:43Z
dc.date.available 2024-06-19T14:29:43Z
dc.date.issued 2024
dc.description Iheme, Leonardo/0000-0002-1136-3961; ERDEM, Yusuf Sait/0000-0002-8515-8303; Morani, Kenan/0000-0002-4383-5732; Yalcin-Ozuysal, Ozden/0000-0003-0552-368X; Unay, Devrim/0000-0003-3478-7318; Toreyin, Behcet Ugur/0000-0003-4406-2783 en_US
dc.description.abstract Recent advancements in the field of image synthesis have led to the development of Neural Style Transfer (NST) and Generative Adversarial Networks (GANs) which have proven to be powerful tools for data augmentation and realistic data generation. While GANs have been widely used for both data augmentation and generation, NST has not been employed for data generation tasks. Nonetheless, the simpler structure of NST compared to GANs makes it a promising alternative. In this research, we introduce an NST-based method for data generation, which to the best of our knowledge, is the first of its kind. By taking advantage of simplified architecture of NST models attributed to the utilization of a real image as the style input, our method enhances performance in data generation tasks under limited resource conditions. Additionally by utilizing patch-based training and high-resolution inference process high quality images are synthesized with limited resources. Furthermore multi-model and noised input is utilized for increased diversity with the novel NST-based data generation approach. Our proposed method utilizes binary segmentation maps as the condition input, representing the cell and wound regions. We evaluate the performance of our proposed NST-based method and compare it with a modified and fine-tuned conditional GAN (C-GAN) methods for the purpose of conditional generation of phase-contrast wound healing assay images. Through a series of quantitative and qualitative analyses, we demonstrate that our NST-based method outperforms the modified C-GAN while utilizing fewer resources. Additionally, we show that our NST-based method enhances segmentation performance when used as a data augmentation method. Our findings provide compelling evidence regarding the potential of NST for data generation tasks and its superiority over traditional GAN-based methods. The NST for data generation method was implemented in Python language and will be accessible at https://github.com/IDU-CVLab/NST_for_Gen under the MIT licence. © 2024 Elsevier Ltd en_US
dc.description.sponsorship Türkiye Bilimsel ve Teknolojik Araştırma Kurumu, TÜBİTAK, (119E578, FP7 PIRG08-GA-2010-27697); Türkiye Bilimsel ve Teknolojik Araştırma Kurumu, TÜBİTAK en_US
dc.identifier.doi 10.1016/j.bspc.2024.106514
dc.identifier.issn 1746-8094
dc.identifier.scopus 2-s2.0-85195813996
dc.identifier.uri https://doi.org/10.1016/j.bspc.2024.106514
dc.identifier.uri https://hdl.handle.net/11147/14580
dc.language.iso en en_US
dc.publisher Elsevier Ltd en_US
dc.relation.ispartof Biomedical Signal Processing and Control en_US
dc.rights info:eu-repo/semantics/closedAccess en_US
dc.subject Biomedical image synthesis en_US
dc.subject Generative artificial neural network en_US
dc.subject Neural style transfer en_US
dc.subject Phase-contrast microscopy en_US
dc.subject Wound healing en_US
dc.title Novel Neural Style Transfer Based Data Synthesis Method for Phase-Contrast Wound Healing Assay Images en_US
dc.type Article en_US
dspace.entity.type Publication
gdc.author.id Iheme, Leonardo/0000-0002-1136-3961
gdc.author.id ERDEM, Yusuf Sait/0000-0002-8515-8303
gdc.author.id Morani, Kenan/0000-0002-4383-5732
gdc.author.id Yalcin-Ozuysal, Ozden/0000-0003-0552-368X
gdc.author.id Unay, Devrim/0000-0003-3478-7318
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gdc.author.id Morani, Kenan / 0000-0002-4383-5732 en_US
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gdc.author.id Unay, Devrim / 0000-0003-3478-7318 en_US
gdc.author.id Toreyin, Behcet Ugur / 0000-0003-4406-2783 en_US
gdc.author.scopusid 57216734973
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gdc.author.wosid Yalcin Ozuysal, Ozden/D-5528-2019
gdc.author.wosid Iheme, Leonardo/AAE-2987-2022
gdc.author.wosid erdem, yusuf/AAE-1131-2020
gdc.author.wosid Unay, Devrim/G-6002-2010
gdc.author.wosid Morani, Kenan/ITV-5602-2023
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gdc.coar.access metadata only access
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gdc.description.department Izmir Institute of Technology en_US
gdc.description.departmenttemp Erdem Y.S., Department of Electrical and Electronics Engineering in Izmir Democracy University, İzmir, Turkey, R&D Department in Trio Mobil Bilişim Sistemleri, İstanbul, Turkey; Iheme L.O., AI Team in Virasoft Inc., Turkey; Uçar M., Department of Electrical and Electronics Engineering in Izmir Democracy University, İzmir, Turkey; Özuysal Ö.Y., Molecular Biology and Genetics Department in İzmir Institute of Technology, İzmir, Turkey; Balıkçı M., Molecular Biology and Genetics Department in İzmir Institute of Technology, İzmir, Turkey; Morani K., Department of Electrical and Electronics Engineering in Izmir Democracy University, İzmir, Turkey; Töreyin B.U., Informatics Institute in Istanbul Technical University, İstanbul, Turkey; Ünay D., Department of Electrical and Electronics Engineering in Izmir Democracy University, İzmir, Turkey en_US
gdc.description.publicationcategory Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı en_US
gdc.description.scopusquality Q1
gdc.description.volume 96 en_US
gdc.description.woscitationindex Science Citation Index Expanded
gdc.description.wosquality Q2
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