Identification of Cytoplasmic Sialidase Neu2-Associated Proteins by Lc-ms/Ms
| dc.contributor.author | Akyıldız Demir, Seçil | |
| dc.contributor.author | Seyrantepe, Volkan | |
| dc.coverage.doi | 10.1515/tjb-2018-0089 | |
| dc.date.accessioned | 2020-07-25T22:16:56Z | |
| dc.date.available | 2020-07-25T22:16:56Z | |
| dc.date.issued | 2019 | |
| dc.description.abstract | Background: Cytoplasmic sialidase (NEU2) plays an active role in removing sialic acids from oligosaccharides, gly-copeptides, and gangliosides in mammalian cells. NEU2 is involved in various cellular events, including cancer metabolism, neuronal and myoblast differentiation, proliferation, and hypertrophy. However, NEU2-interacting protein(s) within the cell have not been identified yet. Objective: The aim of this study is to investigate NEU2 interacting proteins using two-step affinity purification (TAP) strategy combined with mass spectrometry analysis. Methods: In this study, NEU2 gene was cloned into the pCTAP expression vector and transiently transfected to COS-7 cells by using PEI. The most efficient expression time of NEU2- tag protein was determined by real-time PCR and Western blot analysis. NEU2-interacting protein(s) were investigated by using TAP strategy combined with two different mass spectrometry experiment; LC-MS/MS and MALDI TOF/TOF. Results: Here, mass spectrometry analysis showed four proteins; a-actin, beta-actin, calmodulin and histone H1.2 proteins are associated with NEU2. The interactions between NEU2 and actin filaments were verified by Western blot analysis and immunofluorescence analysis. Conclusions: Our study suggests that association of NEU2 with actin filaments and other protein(s) could be important for understanding the biological role of NEU2 in mammalian cells. | en_US |
| dc.identifier.doi | 10.1515/tjb-2018-0089 | |
| dc.identifier.issn | 0250-4685 | |
| dc.identifier.issn | 1303-829X | |
| dc.identifier.scopus | 2-s2.0-85073574385 | |
| dc.identifier.uri | https://doi.org/10.1515/tjb-2018-0089 | |
| dc.identifier.uri | https://hdl.handle.net/11147/9567 | |
| dc.language.iso | en | en_US |
| dc.publisher | Türk Biyokimya Derneği | en_US |
| dc.relation.ispartof | Turkish Journal of Biochemistry | en_US |
| dc.rights | info:eu-repo/semantics/closedAccess | en_US |
| dc.subject | Sialidase | en_US |
| dc.subject | NEU2 | en_US |
| dc.subject | Actin | en_US |
| dc.subject | Calmodulin | en_US |
| dc.subject | Streptavidin | en_US |
| dc.title | Identification of Cytoplasmic Sialidase Neu2-Associated Proteins by Lc-ms/Ms | en_US |
| dc.title.alternative | Sitoplazmik sialidaz NEU2 ile ilişkili proteinlerin LC-MS/MS ile tanımlanması | en_US |
| dc.type | Article | en_US |
| dspace.entity.type | Publication | |
| gdc.author.institutional | Demir, Seçil Akyıldız | |
| gdc.author.institutional | Seyrantepe, Volkan | |
| gdc.bip.impulseclass | C5 | |
| gdc.bip.influenceclass | C5 | |
| gdc.bip.popularityclass | C5 | |
| gdc.coar.access | metadata only access | |
| gdc.coar.type | text::journal::journal article | |
| gdc.collaboration.industrial | false | |
| gdc.description.department | İzmir Institute of Technology. Molecular Biology and Genetics | en_US |
| gdc.description.endpage | 472 | en_US |
| gdc.description.issue | 4 | en_US |
| gdc.description.publicationcategory | Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı | en_US |
| gdc.description.scopusquality | Q4 | |
| gdc.description.startpage | 462 | en_US |
| gdc.description.volume | 44 | en_US |
| gdc.description.wosquality | Q4 | |
| gdc.identifier.openalex | W2886613706 | |
| gdc.identifier.trdizinid | 340492 | |
| gdc.identifier.wos | WOS:000489303900006 | |
| gdc.index.type | WoS | |
| gdc.index.type | Scopus | |
| gdc.index.type | TR-Dizin | |
| gdc.oaire.accesstype | GOLD | |
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| gdc.oaire.publicfunded | false | |
| gdc.oaire.sciencefields | 0301 basic medicine | |
| gdc.oaire.sciencefields | 03 medical and health sciences | |
| gdc.openalex.collaboration | National | |
| gdc.openalex.fwci | 0.10710461 | |
| gdc.openalex.normalizedpercentile | 0.47 | |
| gdc.opencitations.count | 1 | |
| gdc.plumx.crossrefcites | 2 | |
| gdc.plumx.mendeley | 2 | |
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