Identification of Cytoplasmic Sialidase Neu2-Associated Proteins by Lc-ms/Ms

dc.contributor.author Akyıldız Demir, Seçil
dc.contributor.author Seyrantepe, Volkan
dc.contributor.author Seyrantepe, Volkan
dc.contributor.other 04.03. Department of Molecular Biology and Genetics
dc.contributor.other 04. Faculty of Science
dc.contributor.other 01. Izmir Institute of Technology
dc.coverage.doi 10.1515/tjb-2018-0089
dc.date.accessioned 2020-07-25T22:16:56Z
dc.date.available 2020-07-25T22:16:56Z
dc.date.issued 2019
dc.description.abstract Background: Cytoplasmic sialidase (NEU2) plays an active role in removing sialic acids from oligosaccharides, gly-copeptides, and gangliosides in mammalian cells. NEU2 is involved in various cellular events, including cancer metabolism, neuronal and myoblast differentiation, proliferation, and hypertrophy. However, NEU2-interacting protein(s) within the cell have not been identified yet. Objective: The aim of this study is to investigate NEU2 interacting proteins using two-step affinity purification (TAP) strategy combined with mass spectrometry analysis. Methods: In this study, NEU2 gene was cloned into the pCTAP expression vector and transiently transfected to COS-7 cells by using PEI. The most efficient expression time of NEU2- tag protein was determined by real-time PCR and Western blot analysis. NEU2-interacting protein(s) were investigated by using TAP strategy combined with two different mass spectrometry experiment; LC-MS/MS and MALDI TOF/TOF. Results: Here, mass spectrometry analysis showed four proteins; a-actin, beta-actin, calmodulin and histone H1.2 proteins are associated with NEU2. The interactions between NEU2 and actin filaments were verified by Western blot analysis and immunofluorescence analysis. Conclusions: Our study suggests that association of NEU2 with actin filaments and other protein(s) could be important for understanding the biological role of NEU2 in mammalian cells. en_US
dc.identifier.doi 10.1515/tjb-2018-0089
dc.identifier.issn 0250-4685
dc.identifier.issn 1303-829X
dc.identifier.scopus 2-s2.0-85073574385
dc.identifier.uri https://doi.org/10.1515/tjb-2018-0089
dc.identifier.uri https://hdl.handle.net/11147/9567
dc.language.iso en en_US
dc.publisher Türk Biyokimya Derneği en_US
dc.relation.ispartof Turkish Journal of Biochemistry en_US
dc.rights info:eu-repo/semantics/closedAccess en_US
dc.subject Sialidase en_US
dc.subject NEU2 en_US
dc.subject Actin en_US
dc.subject Calmodulin en_US
dc.subject Streptavidin en_US
dc.title Identification of Cytoplasmic Sialidase Neu2-Associated Proteins by Lc-ms/Ms en_US
dc.title.alternative Sitoplazmik sialidaz NEU2 ile ilişkili proteinlerin LC-MS/MS ile tanımlanması en_US
dc.type Article en_US
dspace.entity.type Publication
gdc.author.institutional Demir, Seçil Akyıldız
gdc.author.institutional Seyrantepe, Volkan
gdc.bip.impulseclass C5
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gdc.bip.popularityclass C5
gdc.coar.access metadata only access
gdc.coar.type text::journal::journal article
gdc.collaboration.industrial false
gdc.description.department İzmir Institute of Technology. Molecular Biology and Genetics en_US
gdc.description.endpage 472 en_US
gdc.description.issue 4 en_US
gdc.description.publicationcategory Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı en_US
gdc.description.scopusquality Q4
gdc.description.startpage 462 en_US
gdc.description.volume 44 en_US
gdc.description.wosquality Q4
gdc.identifier.openalex W2886613706
gdc.identifier.trdizinid 340492
gdc.identifier.wos WOS:000489303900006
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gdc.oaire.accesstype GOLD
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gdc.oaire.publicfunded false
gdc.oaire.sciencefields 0301 basic medicine
gdc.oaire.sciencefields 03 medical and health sciences
gdc.openalex.collaboration National
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