Identification of Cytoplasmic Sialidase Neu2-Associated Proteins by Lc-ms/Ms

dc.contributor.author Akyıldız Demir, Seçil
dc.contributor.author Seyrantepe, Volkan
dc.coverage.doi 10.1515/tjb-2018-0089
dc.date.accessioned 2020-07-25T22:16:56Z
dc.date.available 2020-07-25T22:16:56Z
dc.date.issued 2019
dc.description.abstract Background: Cytoplasmic sialidase (NEU2) plays an active role in removing sialic acids from oligosaccharides, gly-copeptides, and gangliosides in mammalian cells. NEU2 is involved in various cellular events, including cancer metabolism, neuronal and myoblast differentiation, proliferation, and hypertrophy. However, NEU2-interacting protein(s) within the cell have not been identified yet. Objective: The aim of this study is to investigate NEU2 interacting proteins using two-step affinity purification (TAP) strategy combined with mass spectrometry analysis. Methods: In this study, NEU2 gene was cloned into the pCTAP expression vector and transiently transfected to COS-7 cells by using PEI. The most efficient expression time of NEU2- tag protein was determined by real-time PCR and Western blot analysis. NEU2-interacting protein(s) were investigated by using TAP strategy combined with two different mass spectrometry experiment; LC-MS/MS and MALDI TOF/TOF. Results: Here, mass spectrometry analysis showed four proteins; a-actin, beta-actin, calmodulin and histone H1.2 proteins are associated with NEU2. The interactions between NEU2 and actin filaments were verified by Western blot analysis and immunofluorescence analysis. Conclusions: Our study suggests that association of NEU2 with actin filaments and other protein(s) could be important for understanding the biological role of NEU2 in mammalian cells. en_US
dc.identifier.doi 10.1515/tjb-2018-0089
dc.identifier.issn 0250-4685
dc.identifier.issn 1303-829X
dc.identifier.scopus 2-s2.0-85073574385
dc.identifier.uri https://doi.org/10.1515/tjb-2018-0089
dc.identifier.uri https://hdl.handle.net/11147/9567
dc.language.iso en en_US
dc.publisher Türk Biyokimya Derneği en_US
dc.relation.ispartof Turkish Journal of Biochemistry en_US
dc.rights info:eu-repo/semantics/closedAccess en_US
dc.subject Sialidase en_US
dc.subject NEU2 en_US
dc.subject Actin en_US
dc.subject Calmodulin en_US
dc.subject Streptavidin en_US
dc.title Identification of Cytoplasmic Sialidase Neu2-Associated Proteins by Lc-ms/Ms en_US
dc.title.alternative Sitoplazmik sialidaz NEU2 ile ilişkili proteinlerin LC-MS/MS ile tanımlanması en_US
dc.type Article en_US
dspace.entity.type Publication
gdc.author.institutional Demir, Seçil Akyıldız
gdc.author.institutional Seyrantepe, Volkan
gdc.bip.impulseclass C5
gdc.bip.influenceclass C5
gdc.bip.popularityclass C5
gdc.coar.access metadata only access
gdc.coar.type text::journal::journal article
gdc.collaboration.industrial false
gdc.description.department İzmir Institute of Technology. Molecular Biology and Genetics en_US
gdc.description.endpage 472 en_US
gdc.description.issue 4 en_US
gdc.description.publicationcategory Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı en_US
gdc.description.scopusquality Q4
gdc.description.startpage 462 en_US
gdc.description.volume 44 en_US
gdc.description.wosquality Q4
gdc.identifier.openalex W2886613706
gdc.identifier.trdizinid 340492
gdc.identifier.wos WOS:000489303900006
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gdc.oaire.sciencefields 0301 basic medicine
gdc.oaire.sciencefields 03 medical and health sciences
gdc.openalex.collaboration National
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gdc.openalex.normalizedpercentile 0.47
gdc.opencitations.count 1
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