Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7148
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Article Citation - WoS: 2Citation - Scopus: 2Identification of Novel Arsenic Resistance Genes in Yeast(Wiley, 2022) Işık, Esin; Balkan, Çiğdem; Karl, Vivien; Karakaya, Hüseyin Çağlar; Hua, Sansan; Rauch, Sebastien; Tamás, Markus J; Koç, AhmetArsenic is a toxic metalloid that affects human health by causing numerous diseases and by being used in the treatment of acute promyelocytic leukemia. Saccharomyces cerevisiae (budding yeast) has been extensively utilized to elucidate the molecular mechanisms underlying arsenic toxicity and resistance in eukaryotes. In this study, we applied a genomic DNA overexpression strategy to identify yeast genes that provide arsenic resistance in wild-type and arsenic-sensitive S. cerevisiae cells. In addition to known arsenic-related genes, our genetic screen revealed novel genes, including PHO86, VBA3, UGP1, and TUL1, whose overexpression conferred resistance. To gain insights into possible resistance mechanisms, we addressed the contribution of these genes to cell growth, intracellular arsenic, and protein aggregation during arsenate exposure. Overexpression of PHO86 resulted in higher cellular arsenic levels but no additional effect on protein aggregation, indicating that these cells efficiently protect their intracellular environment. VBA3 overexpression caused resistance despite higher intracellular arsenic and protein aggregation levels. Overexpression of UGP1 led to lower intracellular arsenic and protein aggregation levels while TUL1 overexpression had no impact on intracellular arsenic or protein aggregation levels. Thus, the identified genes appear to confer arsenic resistance through distinct mechanisms but the molecular details remain to be elucidated.Article Citation - WoS: 32Citation - Scopus: 35Distribution of Geothermal Arsenic in Relation To Geothermal Play Types: a Global Review and Case Study From the Anatolian Plate (turkey)(Elsevier, 2021) Baba, Alper; Uzelli, Taygun; Sözbilir, HasanArsenic has a natural cycle as it travels underground. It can mix with geothermal fluid in different ways under the control of magmatic and tectonic processes. Geogenic arsenic is present in many geothermal fields in the world at concentrations above the limits set for human health. The arsenic content of geothermal fluids is also related to the concept of geothermal play type, which forms geothermal systems, because the natural processes that form the geothermal system also control the arsenic cycle. In this study, an attempt is made to explain the relationship between the geothermal play type concept and geothermal arsenic circulation. For this purpose, geothermal field examples are given from around the world and Turkey. The result shows that arsenic concentrations can reach significant levels along with plate tectonic boundaries in the world. When arsenic concentrations were evaluated, the effect of major faults on the Anatolian Plate was clearly seen. Also, in the Anatolian plate where volcanosedimentary units are common, geothermal fluids caused more effective alteration along with structural control and increased arsenic concentrations in geothermal systems. This interaction between structural elements, geothermal fluid, and the arsenic cycle shows that the concept of play type in geothermal systems should also be taken into consideration. It was determined that the places with high arsenic values are located within the convective-non-magmatic extensional geothermal play types such as Western Anatolian Extensional System and the North Anatolian Fault. The concept of play type in geothermal systems includes all systematic and external factors that make up these processes. For this reason, it is very important to evaluate the play type classification together with the arsenic cycle.Article Citation - WoS: 58Citation - Scopus: 59Assessment of Different Nanofiltration and Reverse Osmosis Membranes for Simultaneous Removal of Arsenic and Boron From Spent Geothermal Water(Elsevier, 2021) Jarma, Yakubu A.; Karaoğlu, Aslı; Tekin, Özge; Baba, Alper; Ökten, H.Eser; Tomaszewska, Barbara; Kabay, NalanOne of the factors that determine agricultural crops’ yield is the quality of water used during irrigation. In this study, we assessed the usability of spent geothermal water for agricultural irrigation after membrane treatment. Preliminary membrane tests were conducted on a laboratory-scale set up followed by mini-pilot scale tests in a geothermal heating center. In part I, three commercially available membranes (XLE BWRO, NF90, and Osmonics CK- NF) were tested using a cross-flow flat-sheet membrane testing unit (Sepa CF II, GE-Osmonics) under constant applied pressure of 20 bar. In part II, different spiral wound membranes (TR-NE90-NF, TR-BE-BW, and BW30) other than the ones used in laboratory tests were employed for the mini-pilot scale studies in a continuous mode. Water recovery and applied pressure were maintained constant at 60% and 12 bar, respectively. Performances of the membranes were assessed in terms of the permeate flux, boron and arsenic removals. In laboratory tests, the permeate fluxes were measured as 94.3, 87.9, and 64.3 L m?2 h?1 for XLE BWRO, CK-NF and NF90 membranes, respectively. The arsenic removals were found as 99.0%, 87.5% and 83.6% while the boron removals were 56.8%, 54.2%, and 26.1% for XLE BWRO, NF90 and CK-NF membranes, respectively. In field tests, permeate fluxes were 49.9, 26.8 and 24.0 L m?2 h?1 for TR-NE90-NF, BW30-RO and TR-BE-BW membranes, respectively. Boron removals were calculated as 49.9%, 44.1% and 40.7% for TR-BE-BW, TR-NE90-NF and BW30-RO membranes, respectively. Removal efficiencies of arsenic in mini-pilot scale membrane tests were all over 90%. Quality of the permeate water produced was suitable for irrigation in terms of the electrical conductivity (EC) and the total dissolved solids (TDS) for all tested membranes with respect to guidelines set by the Turkish Ministry of Environment and Urbanisation (TMEU). However, XLE BWRO, CK-NF and NF90 membranes failed to meet the required limits for irrigation in terms of boron and arsenic concentrations in the product water. The permeate streams of TR-BE-BW, TR-NE90-NF and BW30-RO membranes complied with the irrigation water standards in terms of EC, TDS and arsenic concentration while boron concentration remained above the allowable limit. © 2020 Elsevier B.V.Article Citation - WoS: 2Citation - Scopus: 2A Deterministic and Stochastic Assessment for Exposure and Risk of Arsenic Via Ingestion of Edible Crops(Springer Verlag, 2019) Can Terzi, Begüm; Gündüz, Orhan; Sofuoğlu, Sait CemilNatural arsenic contamination is a critical problem for various places around the world. Simav Plain (Kutahya, Turkey) is one such area that was shown to have natural arsenic contamination in its waters and soils. Arsenic exposure through ingestion of edible crops cultivated in Simav Plain and associated health risks were assessed in this study. To achieve this objective, arsenic levels in 18 crop species were estimated based on measured soil arsenic concentrations. Individual and aggregate non-carcinogenic and carcinogenic risks associated with ingestion of arsenic-contaminated crops were then assessed with scenario-based deterministic point estimates and stochastic population estimates. Monte Carlo simulation was used for the estimation of population health risks. Accordingly, wheat was found as the highest-ranked crop specie for the both types of health risks, followed by tomato and potato, which are three of the most consumed crops in the region. The risk levels estimated in this study were relatively high, indicating consumption of crops grown in the plain may be posing significant health risks even at lower-bound estimates. Consuming wheat, tomato, potato, and their products from uncontaminated sources was found to reduce the aggregate risks up to 88% implicating the importance of proposing suitable management measures for similar risk-prone areas.Article Citation - WoS: 18Citation - Scopus: 22The Health Risk Associated With Chronic Diseases in Villages With High Arsenic Levels in Drinking Water Supplies(Springer Verlag, 2017) Gündüz, Orhan; Bakar, Coşkun; Şimşek, Celalettin; Baba, Alper; Elçi, Alper; Gürleyük, Hakan; Mutlu, Merdiye; Çakır, AyşeThis study is intended to compare and assess the distribution and possible causes of current chronic diseases in villages with high arsenic levels in drinking water supplies. It is a cross-sectional epidemiological research that analyzes the frequency and underlying risk factors of chronic diseases in villages with varying levels of arsenic exposure through drinking water. Sample space of study included 1003 individuals, 614 of whom were from villages with high arsenic levels in drinking water and remaining 389 were from two control villages with below-limit arsenic levels in drinking water. While nutritional habits and living environments of two groups were similar, cigarette smoking and alcohol use were higher in villages with low arsenic levels. Mini mental state examination test results in 60+ age group were lower in villages with high arsenic levels. Although no statistically significant differences were detected in chronic disease occurrence between the groups, the number of cases was higher in villages with higher percentage of cigarette smoking and alcohol use. Moreover, cases of lung, colon, and stomach cancers were higher in villages with high arsenic levels in drinking water supplies.Article Citation - WoS: 83Citation - Scopus: 92Source of Arsenic Based on Geological and Hydrogeochemical Properties of Geothermal Systems in Western Turkey(Elsevier Ltd., 2012) Baba, Alper; Sözbilir, HasanTurkey is an area of complex geology with active tectonics and high geothermal potential. Especially, the western part of Turkey is a region of abundant geothermal activity. Faults accommodating the deep circulation of hydrothermal fluids of meteoric origin are the primary means by which of geothermal systems are controlled in this region. Many of the thermal activities are related to the improved dilation on the ~E-W-strikes of the graben faults. This situation serves as a suitable environment for the presence of high levels of arsenic in geothermal water resources. The highest concentrations of naturally occurring aqueous arsenic (As) are found in certain types of geothermal waters, generally those related to major graben faults. In this regard, high arsenic concentrations in geothermal resources have been detected in Western Turkey, including but not limited to Biga Peninsulla, Gediz Graben, Kucuk, and Buyuk Menderes Graben with values ranging from 1 to 1419ppb in geothermal fluids. The thermal waters have surface temperatures of up to 100°C and reservoir temperatures range from 150 to 248°C in the Menderes Graben, from 120 to 287°C in the Gediz Graben, and from 153 to 174°C in Biga Peninsula. Hydrogeochemically, the Menderes graben and Gediz Graben thermal waters are of the Na-HCO3, Ca-HCO3, and Na-SO4 types, whereas some geothermal fluids such as those of Tuzla and Kestanbol in the Biga Peninsula, Çeşme, and Urla are of the Na-Cl type.Article Citation - WoS: 72Citation - Scopus: 90Naturally Occurring Arsenic in Terrestrial Geothermal Systems of Western Anatolia, Turkey: Potential Role in Contamination of Freshwater Resources(Elsevier Ltd., 2013) Bundschuh, Jochen; Maity, Jyoti Prakash; Nath, B.; Baba, Alper; Gündüz, Orhan; Kulp, Thomas R.; Jean, Jiin-Shuh; Kar, Sandeep; Yang, Huai-Jen; Tseng, Yujung; Bhattacharya, Prosun; Chen, ChienyenArsenic (As) contamination in terrestrial geothermal systems has been identified in many countries worldwide. Concentrations higher than 0.01mg/L are detrimental to human health. We examined potential consequences for As contamination of freshwater resources based on hydrogeochemical investigations of geothermal waters in deep wells and hot springs collected from western Anatolia, Turkey. We analyzed samples for major ions and trace element concentrations. Temperature of geothermal waters in deep wells showed extreme ranges (40 and 230°C), while, temperature of hot spring fluids was up to 90°C. The Piper plot illustrated two dominant water types: Na-HCO3 - type for geothermal waters in deep wells and Ca-HCO3 - type for hot spring fluids. Arsenic concentration ranged from 0.03 to 1.5mg/L. Dominance of reduced As species, i.e., As(III), was observed in our samples. The Eh value ranged between -250 and 119mV, which suggests diverse geochemical conditions. Some of the measured trace elements were found above the World Health Organization guidelines and Turkish national safe drinking water limits. The variation in pH (range: 6.4-9.3) and As in geothermal waters suggest mixing with groundwater. Mixing of geothermal waters is primarily responsible for contamination of freshwater resources and making them unsuitable for drinking or irrigation.Article Citation - WoS: 109Citation - Scopus: 124Chitosan Fiber-Supported Zero-Valent Iron Nanoparticles as a Novel Sorbent for Sequestration of Inorganic Arsenic(Royal Society of Chemistry, 2013) Horzum Polat, Nesrin; Demir, Mustafa Muammer; Nairat, Muath; Shahwan, TalalThis study proposes a new sorbent for the removal of inorganic arsenic from aqueous solutions. Monodispersed nano zero-valent iron (nZVI) particles were nucleated at the surface of electrospun chitosan fibers (average fiber diameter of 195 ± 50 nm) by liquid phase reduction of FeCl3 using NaBH4. The material was characterized using SEM, TGA, XPS, XRD, and FTIR. The diameter of iron nanoparticles was found to vary between 75-100 nm. A set of batch experiments were carried out to elucidate the efficiency of the composite sorbent toward fixation of arsenite and arsenate ions. The ion concentrations in the supernatant solutions were determined using inductively coupled plasma-mass spectrometry (ICP-MS). The results revealed that the chitosan fiber supported nZVI particles is an excellent sorbent material for inorganic arsenic uptake at concentrations ranging from 0.01 to 5.00 mg L -1 over a wide range of pH values. Based on XPS analysis, As(iii) was found to undergo oxidation to As(v) upon sorption, while As(v) retained its oxidation state. By virtue of the successful combination of the electrospun fibers' mechanical integrity and the large reactivity of dispersed nZVI particles, the applicability of the resulting sorbent material in arsenic sorption holds broad promise.Article Citation - WoS: 36Citation - Scopus: 42Speciated Arsenic Concentrations, Exposure, and Associated Health Risks for Rice and Bulgur(Elsevier Ltd., 2014) Sofuoğlu, Sait Cemil; Güzelkaya, Hilal; Akgül, Özlem; Kavcar, Pınar; Kurucaovalı, Filiz; Sofuoğlu, AysunArsenic species were determined in rice and bulgur samples that were collected from 50 participants who also supplied exposure related information through a questionnaire survey. Speciation analysis was conducted using an HPLC-ICP-MS system. Ingestion exposure to arsenic and associated health risks were assessed by combining the concentration and questionnaire data both for individual participants and the subject population. Inorganic arsenic dominated both in rice and bulgur but concentrations were about an order of magnitude higher in rice (160. ±. 38. ng/g) than in bulgur. Because participants also consumed more rice than bulgur, exposures were significantly higher for rice resulting in carcinogenic risks above acceptable level for 53% and 93% of the participants when the in-effect and the proposed potencies were used, respectively, compared to 0% and 5% for bulgur. An inorganic arsenic standard for rice would be useful to lower the risks while public awareness about the relation between excessive rice consumption and health risks is built, and bulgur consumption is promoted.Article Citation - WoS: 303Citation - Scopus: 336A Health Risk Assessment for Exposure To Trace Metals Via Drinking Water Ingestion Pathway(Elsevier Ltd., 2009) Kavcar, Pınar; Sofuoğlu, Aysun; Sofuoğlu, Sait CemilA health risk assessment was conducted for exposure to trace metals via drinking water ingestion pathway for Province of İzmir, Turkey. Concentrations of 11 trace metals were measured in drinking waters collected from 100 population weighted random sampling units (houses). The samples were analyzed in atomic absorption spectrometry for arsenic, and inductively coupled plasma-optical emission spectrometry for Be, Cd, Co, Cr, Cu, Mn, Ni, Pb, V, and Zn. Questionnaires were administered to a participant from each sampling unit to determine drinking water consumption related information and demographics. Exposure and risks were estimated for each individual by direct calculation, and for İzmir population by Monte Carlo simulation. Six trace metals (As, Cr, Cu, Mn, Ni, and Zn) were detected in >50% of the samples. Concentrations of As and Ni exceeded the corresponding standards in 20% and 58% of the samples, respectively. As a result, arsenic noncarcinogenic risks were higher than the level of concern for 19% of the population, whereas carcinogenic risks were >10-4 for 46%, and >10-6 for 90% of the population.