Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
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Book Part Application of Geothermal Energy in Hydrogen Production(Taylor and Francis, 2024) Ayzit, T.; Özmumcu, A.; Baba, A.Compared to other renewable resources, geothermal energy is a low-cost, technically proven, reliable, clean, and safe energy source that has been used in various fields and applications for many decades. These energy sources can be used directly or by conversion to other forms of energy. The use of geothermal energy for various purposes such as electricity, heating, cooling, greenhouses, dry food, thermal tourism, fisheries, and mineral extraction is widespread in many countries. Today’s installed geothermal capacity is dominated by the United States with about 3.7 GW, followed by Indonesia (2.1 GW), the Philippines (1.9 GW), Turkey (1.7 GW), and New Zealand. Global geothermal power generation capacity at the end of 2020 was 15.6 GW. The top ten geothermal producers account for nearly 90% of the global market, and many countries, especially Europe, plan to invest in geothermal soon. Looking at the direct use of geothermal energy for thermal applications, only four countries (China, Turkey, Iceland, and Japan) account for three-quarters of the energy consumed. Hydrogen can provide a number of benefits for future energy systems. Hydrogen can serve as storage for intermittent renewables or provide grid services. It can replace natural gas in industrial heating processes that are otherwise difficult to decarbonise. Therefore, geothermal resources can be used to produce clean hydrogen. Within this section, the importance and use of geothermal energy have been highlighted. At the same time, detailed information is given about the importance of hydrogen, its production, and its use in connection with geothermal energy. © 2025 selection and editorial matter, Mohammad Reza Rahimpour, Mohammad Amin Makarem, and Parvin Kiani.Book Part Citation - Scopus: 2Comparative Mapping(CRC Press, 2024) Frary, A.; Doganlar, S.; Ratnaparkhe, M.B.In the mid 1980s, restriction fragment length polymorphism (RFLP) analysis was first applied to plants for the purposes of creating genetic linkage maps. Using the maps developed for major crop species, the genes controlling qualitative and quantitative traits could be detected and then selected for (via closely linked molecular markers) in breeding programs. Advances in DNA marker technology not only allowed the rapid generation of high-resolution plant genetic maps, but also facilitated detailed comparisons among species. When complementary molecular markers are mapped across related species, it is then possible to align the chromosomes of those species to create comparative linkage maps. In this way, genomic similarities between species are revealed so that genetic information about one species may be extended to others and evolutionary inferences drawn. © 2008, CRC Press. All rights reserved.Article Citation - WoS: 2Citation - Scopus: 2Fabrication of Bioactive Helix Aspersa Extract-Loaded Chitosan-Based Bilayer Wound Dressings for Skin Tissue Regeneration(Amer Chemical Soc, 2024) Perpelek, Merve; Tıhmınlıoğlu, Funda; Tamburaci, Sedef; Karakasli, Ahmet; Tihminlioglu, FundaIn recent years, there has been a notable shift toward exploring plant and animal extracts for the fabrication of tissue engineering structures that seamlessly integrate with the human body, providing both biological compatibility and physical reinforcement. In this particular investigation, we synthesized bilayer wound dressings by incorporating snail (Helix aspersa) secretions, comprising mucus and slime, into chitosan matrices via lyophilization and electrospinning methodologies. A nanofiber layer was integrated on top of the porous structure to mimic the epidermal layer for keratinocyte activity as well as acting as an antibacterial barrier against possible infection, whereas a porous structure was designed to mimic the dermal microenvironment for fibroblast activity. Comprehensive assessments encompassing physical characterization, antimicrobial efficacy, in vitro bioactivity, and wound healing potential were conducted on these bilayer dressings. Our findings revealed that the mucus and slime extract loading significantly altered the morphology in terms of nanofiber diameter and average pore size. Snail extracts loaded on a nanofiber layer of bilayer dressings showed slight antimicrobial activity against Staphylococcus epidermidis and Escherichia coli. An in vitro release study of slime extract loaded in the nanofiber layer indicated that both groups 1 and 2 showed a burst release up to 6 h, and a sustained release was observed up to 96 h for group 1, whereas slime extract release from group 2 continued up to 72 h. In vitro bioactivity assays unveiled the favorable impact of mucus and slime extracts on NIH/3T3 fibroblast and HS2 keratinocyte cell attachment, proliferation, and glycosaminoglycan synthesis. Furthermore, our investigations utilizing the in vitro scratch assay showcased the proliferative and migratory effects of mucus and slime extracts on skin cells. Collectively, our results underscore the promising prospects of bioactive snail secretion-loaded chitosan constructs for facilitating skin regeneration and advancing wound healing therapies.Article Citation - WoS: 1Citation - Scopus: 1Completeness of Energy Eigenfunctions for the Reflectionless Potential in Quantum Mechanics(Aip Publishing, 2024) Erman, Fatih; Turgut, O. TeomanThere are a few exactly solvable potentials in quantum mechanics for which the completeness relation of the energy eigenstates can be explicitly verified. In this article, we give an elementary proof that the set of bound (discrete) states together with the scattering (continuum) states of the reflectionless potential form a complete set. We also review a direct and elegant derivation of the energy eigenstates with proper normalization by introducing an analog of the creation and annihilation operators of the harmonic oscillator problem. We further show that, in the case of a single bound state, the corresponding wave function can be found from the knowledge of continuum eigenstates of the system. Finally, completeness is shown by using the even/odd parity eigenstates of the Hamiltonian, which provides another explicit demonstration of a fundamental property of quantum mechanical Hamiltonians.Article Citation - WoS: 1Comparison of Cell-Penetrating and Fusogenic Tat-Ha2 Peptide Performance in Peptideplex, Multicomponent, and Conjugate Sirna Delivery Systems(Amer Chemical Soc, 2024) Uz, Metin; Bulmus, Volga; Altinkaya, Sacide AlsoyIn this study, the performance of the cell-penetrating and fusogenic peptide, TAT-HA2, which consists of a cell-permeable HIV trans-activator of transcription (TAT) protein transduction domain and a pH-responsive influenza A virus hemagglutinin protein (HA2) domain, was comparatively evaluated for the first time in peptideplex, multicomponent, and conjugate siRNA delivery systems. TAT-HA2 in all three systems protected siRNA from degradation, except in the conjugate system with a low Peptide/siRNA ratio. The synergistic effect of different peptide domains enhanced the transfection efficiency of multicomponent and conjugate systems compared to that of peptideplexes, which was attributed to the surface configuration of TAT-HA2 peptides depending on the nature of attachment. Particularly, the multicomponent system showed better cellular uptake and endosomal escape than the peptideplexes, resulting in enhanced siRNA delivery in the cytoplasm. In addition, the presence of cleavable disulfide bonds in multicomponent and conjugate systems promoted the effective siRNA delivery in the cytoplasm, resulting in improved gene silencing activity. The multicomponent system reduced the level of luciferase expression in SKOV3 cells to 45% (+/- 4). In contrast, the conjugate system and the commercially available siRNA transfection agent, Lipofectamine RNAiMax, caused luciferase suppression down to 55% (+/- 2) at a siRNA dose of 100 nM. For the same dose, the peptideplex system could only reduce the luciferase expression to 65% (+/- 5). None of the developed systems showed significant toxicity at any dose. Overall, the TAT-HA2 peptide is promising as a siRNA delivery vector; however, its performance depends on the nature of attachment and, as a result, its surface configuration on the developed delivery system.Article Citation - WoS: 4Citation - Scopus: 4Tailored Bodipy-Based Fluorogenic Probes for Phosgene Detection: a Comparative Evaluation of Recognition Sites(Royal Soc Chemistry, 2024) Dartar, Suay; Kaya, Beraat Umur; Yayak, Yanki Oncu; Vural, Ezgi; Emrullahoglu, MustafaWe constructed two novel boron-dipyrromethene (BODIPY)-based fluorescent probes, BOPD and BOBA, each equipped with the phosgene specific recognition units o-phenylenediamine (OPD) and o-aminobenzylamine (OBA) at the 2-position of the BODIPY core. BOPD and BOBA represent rare examples of BODIPY-based probes that operate by modulating an intramolecular charge transfer process (ICT), as validated by computational studies. We systematically compared the analytic performance of those recognition units while focusing on selectivity, fluorescence turn-on ratios and response times. Probe BOBA, equipped with OBA as the recognition unit, demonstrated a remarkably low detection limit (i.e., 1.40 nM) and a rapid response time (<10 s) for triphosgene. By comparison, BOPD, featuring an OPD unit, showed superior selectivity towards triphosgene, with a detection limit of 93 nM and a response time of up to 30 s. A portable sensing platform was developed by loading BOPD onto test strips made of TLC plates, nonwoven materials and small-headed cotton swabs, which were assessed for their effectiveness in detecting phosgene. We additionally performed the first successful application of a fluorescent probe, namely BOPD, for monitoring the accumulation of phosgene in plants.Article Citation - WoS: 2Citation - Scopus: 2Stabilization of the First-Order Phase Transition Character and Enhancement of the Electrocaloric Effect by Na<sub>0.5</Sub>bi<sub>0.5< Substitution in Batio<sub>3</Sub> Ceramics(Royal Soc Chemistry, 2024) Karakaya, Merve; Gurbuz, Irem; Fulanovic, Lovro; Adem, UmutThe electrocaloric properties of BaTiO3-based Pb-free ferroelectric materials are widely investigated. One approach to achieving a large electrocaloric response is making use of the substantial polarization change associated with the first-order phase transition at the Curie temperature. To make use of this approach, we have investigated the electrocaloric response of (1 - x)BaTiO3-xNa0.5Bi0.5TiO3 (BT-NBT) ceramics for x = 0.05, 0.10, 0.20 and 0.30. For this BT-rich part of the solid solution, it is established that increasing the NBT content increases the tetragonality of the BaTiO3. We show that this increase in tetragonality with NBT substitution helps to maintain the first-order nature of the phase transition in BaTiO3 and correspondingly a large electrocaloric response, despite the simultaneous enhancement of relaxor ferroelectric character with the NBT substitution. A significantly larger effective electrocaloric temperature change (Delta Teff) of 1.65 K was obtained for the x = 0.20 sample under 40 kV cm-1, using the direct measurement of the electrocaloric effect, which is in reasonable agreement with the indirect measurements.Article Citation - WoS: 2Citation - Scopus: 2The Unlimited Joy, 'once You Start You Can't Stop': Masculinity in Domestic Technology Commercials in Turkey(Taylor & Francis Ltd, 2024) Karaosmanoglu, Defne; Ata, Leyla Bektas; Emgin, BaharRecently, studies have begun examining men's interaction with domestic space to explore changing forms of masculinity and domesticity, arguing that housework has become a leisure activity for men, with domestic technologies serving as tools (toys) for them to engage with. In this article, we explore how men in Turkish television commercials of domestic technologies are portrayed and how these portrayals construct and reconstruct discourses of domesticity and masculinity. We aim to understand men's relationship with masculinity, home and domestic work in these commercials. Alongside leisure and fun, we explore the construction of discourses of masculinity and domesticity through specific themes such as the naughty scientist, the self-seeking purchaser, and the flirtatious chef. We argue that seeing more men on screen does not democratise domesticity since the equal share of workload at home is still far from being realised even in these portrayals. We also argue that domesticity is aestheticized with the participation of men and technology. Finally, women are used as instruments by men in reconstructing their masculinity through heterosexuality.Article Citation - WoS: 2Citation - Scopus: 1Gliflozins, Sucrose and Flavonoids Are Allosteric Activators of Lecithin-Cholesterol Acyltransferase(Nature Portfolio, 2024) Niemela, Akseli; Giorgi, Laura; Nouri, Sirine; Yurttas, Betul; Rauniyar, Khushbu; Jeltsch, Michael; Koivuniemi, ArtturiLecithin-cholesterol acyltransferase (LCAT) serves as a pivotal enzyme in preserving cholesterol homeostasis via reverse cholesterol transport, a process closely associated with the onset of atherosclerosis. Impaired LCAT function can lead to severe LCAT deficiency disorders for which no pharmacological treatment exists. LCAT-based therapies, such as small molecule positive allosteric modulators (PAMs), against LCAT deficiencies and atherosclerosis hold promise, although their efficacy against atherosclerosis remains challenging. Herein we utilized a quantitative in silico metric to predict the activity of novel PAMs and tested their potencies with in vitro enzymatic assays. As predicted, sodium-glucose cotransporter 2 (SGLT2) inhibitors (gliflozins), sucrose and flavonoids activate LCAT. This has intriguing implications for the mechanism of action of gliflozins, which are commonly used in the treatment of type 2 diabetes, and for the endogenous activation of LCAT. Our results underscore the potential of molecular dynamics simulations in rational drug design.Article Citation - WoS: 4Citation - Scopus: 4Organolabeler: a Quick and Accurate Annotation Tool for Organoid Images(Amer Chemical Soc, 2024) Kahveci, Burak; Polatli, Elifsu; Bastanlar, Yalin; Guven, SinanOrganoids are self-assembled 3D cellular structures that resemble organs structurally and functionally, providing in vitro platforms for molecular and therapeutic studies. Generation of organoids from human cells often requires long and costly procedures with arguably low efficiency. Prediction and selection of cellular aggregates that result in healthy and functional organoids can be achieved by using artificial intelligence-based tools. Transforming images of 3D cellular constructs into digitally processable data sets for training deep learning models requires labeling of morphological boundaries, which often is performed manually. Here, we report an application named OrganoLabeler, which can create large image-based data sets in a consistent, reliable, fast, and user-friendly manner. OrganoLabeler can create segmented versions of images with combinations of contrast adjusting, K-means clustering, CLAHE, binary, and Otsu thresholding methods. We created embryoid body and brain organoid data sets, of which segmented images were manually created by human researchers and compared with OrganoLabeler. Validation is performed by training U-Net models, which are deep learning models specialized in image segmentation. U-Net models, which are trained with images segmented by OrganoLabeler, achieved similar or better segmentation accuracies than the ones trained with manually labeled reference images. OrganoLabeler can replace manual labeling, providing faster and more accurate results for organoid research free of charge.