Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7148
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Article Mass Spectrometric Profiling Reveals Alterations in N-Glycans and O-Glycans in Tay-Sachs Disease Under Autophagy-Induced Conditions(Springer, 2025) Can, Melike; Basirli, Hande; Jin, Chunsheng; Karlsson, Niclas G.; Bojar, Daniel; Seyrantepe, VolkanTay-Sachs disease is a rare neurodegenerative disorder caused by mutations in the HEXA gene. The HEXA gene encodes the alpha-subunit of the enzyme beta-hexosaminidase A, which degrades GM2 ganglioside. Previously, we identified impaired autophagy in the brains of a mouse model of Tay-Sachs disease, which exhibited neuropathological and clinical abnormalities. Moreover, we demonstrated autophagosome clearance in Tay-Sachs cells under lithium-induced conditions. Here, we further aimed to evaluate N- and O-glycan changes in these cells and examine whether glycan alterations are linked to ER stress. The profiles of N- and O-glycans were analyzed using LC-MS/MS in fibroblasts and neuroglial cells from 5-month-old Hexa-/-Neu3-/- mice and neuroglial cells from Tay-Sachs patients under lithium induction and nutrient deprivation. The expression levels of ER stress-related markers were assessed using qRT-PCR and Western blot analyses. We demonstrated higher levels of high mannose and lower levels of complex types of N-glycans, along with increased O-glycan levels in Tay-Sachs cells. Compared to control groups, we observed upregulated expression of endoplasmic reticulum (ER) stress-related markers, CHOP and ATF-6, in Tay-Sachs cells. Our study demonstrated that autophagy induction causes the degradation of accumulated high-mannose N-glycans and O-glycans, which is associated with the downregulation of ER stress-related genes in Tay-Sachs cells. Our study is the first to show this phenomenon in Tay-Sachs cells and suggests the presence of ER stress-mediated autophagy. Therefore, targeting glycans through autophagy induction could offer therapeutic benefits to patients with Tay-Sachs disease in future studies.Article Citation - WoS: 4Citation - Scopus: 5Breakthrough Curve Analysis of Phosphorylated Hazelnut Shell Waste in Column Operation for Continuous Harvesting of Lithium From Water(Elsevier, 2024) Recepoğlu, Yaşar Kemal; Arar, Ozguer; Yuksel, AsliIn batch-scale operations, biosorption employing phosphorylated hazelnut shell waste (FHS) revealed excellent lithium removal and recovery efficiency. Scaling up and implementing packed bed column systems necessitates further design and performance optimization. Lithium biosorption via FHS was investigated utilizing a continuous-flow packed-bed column operated under various flow rates and bed heights to remove Li to ultra-low levels and recover it. The Li biosorption capacity of the FHS column was unaffected by the bed height, however, when the flow rate was increased, the capacity of the FHS column decreased. The breakthrough time, exhaustion time, and uptake capacity of the column bed increased with increasing column bed height, whereas they decreased with increasing influent flow rate. At flow rates of 0.25, 0.5, and 1.0 mL/min, bed volumes (BVs, mL solution/mL biosorbent) at the breakthrough point were found to be 477, 369, and 347, respectively, with the required BVs for total saturation point of 941, 911, and 829, while the total capacity was calculated as 22.29, 20.07, and 17.69 mg Li/g sorbent. In the 1.0, 1.5, and 2.0 cm height columns filled with FHS, the breakthrough times were 282, 366, and 433 min, respectively, whereas the periods required for saturation were 781, 897, and 1033 min. The three conventional breakthrough models of the Thomas, Yoon-Nelson, and Modified Dose-Response (MDR) were used to properly estimate the whole breakthrough behavior of the FHS column and the characteristic model parameters. Li's extremely favorable separation utilizing FHS was evidenced by the steep S-shape of the breakthrough curves for both parameters flow rate and bed height. The reusability of FHS was demonstrated by operating the packed bed column in multi-cycle mode, with no appreciable loss in column performance.Article Citation - WoS: 13Citation - Scopus: 11Valorization of Olive Tree Pruning Waste for Potential Utilization in Lithium Recovery From Aqueous Solutions(Springer, 2022) Nampeera, Jackline; Recepoğlu, Yaşar Kemal; Yüksel, AslıOlive tree pruning waste, mainly composed of olive branches, was converted into a value-added and sustainable product capable of lithium as a biosorbent through alkali treatment and phosphorylation reaction. Characterization studies were performed by SEM–EDX, XPS, FTIR, and TGA. Factors affecting biosorption mechanism, i.e., sorbent dosage, pH, initial Li+ concentration and temperature, and competitive ions’ presence, were investigated the synthesized functionalized olive branches (FOB). A commercial lithium selective resin, Lewatit TP 260, was also compared with FOB in batch and column studies. The Freundlich model fits adsorption isotherms better than the Langmuir model, with a maximum adsorption capacity of 6.7 mg/g at 30 °C and pH 7–8. Kinetic studies proved fast kinetics and equilibrium were attained in 6 min, while thermodynamic studies showed an exothermic (Δ Ho= - 17.52 kJ/ mol) , spontaneous reaction Δ Go< 0 at all temperatures), and increased randomness Δ So= + 24.27 J/ mol. K) at the interaction interface. Column studies revealed that although Lewatit TP 260 resin showed higher sorption capacity, its desorption efficiency (50.42%) was lower than that of FOB (99.9%), and the degree of column utilization of FOB (56.81%) was better than Lewatit TP 260 resin’s (16.0%). The findings were encouraging in the successful synthesis of a promising biosorbent from an abundant waste in Turkey for use in sustainable lithium recovery from aqueous sources. Graphical abstract: [Figure not available: see fulltext.]Article Citation - WoS: 17Citation - Scopus: 19Effect of Operational Conditions on Separation of Lithium From Geothermal Water by ?-Mno2 Using Ion Exchange–membrane Filtration Hybrid Process(Taylor and Francis Ltd., 2018) Recepoğlu, Yaşar Kemal; Kabay, Nalan; Yoshizuka, Kazuharu; Nishihama, Syouhei; Yılmaz İpek, İdil; Arda, Müşerref; Yüksel, MithatA hybrid system coupling ion exchange and ultrafiltration (UF) was employed to separate lithium from lithium-spiked geothermal water. The effect of process parameters such as adsorbent type, adsorbent dosage, permeate flow rate, and replacement speeds of fresh and saturated adsorbents have been evaluated to determine the efficiency of the hybrid system. According to the results obtained using λ-MnO2 derived from spinel-type lithium manganese dioxide, the optimal operating conditions to separate lithium from geothermal water were found with powdery λ-MnO2 with an adsorbent concentration of 1.5 g adsorbent/L solution, replacement rates of fresh and saturated adsorbents of 6.0 mL/min, and a permeate flow rate of 5.0 mL/min. The ion exchange–UF hybrid system providing an advantage to work with very fine particles easily can be considered as a favorable process for the separation of lithium from geothermal water.Article Citation - WoS: 1Citation - Scopus: 1Adsorption and Diffusion Characteristics of Lithium on Hydrogenated ?- and Ss-Silicene(Beilstein-Institut Zur Forderung der Chemischen Wissenschaften, 2017) İyikanat, Fadıl; Kandemir, Ali; Bacaksız, Cihan; Şahin, HasanUsing first-principles density functional theory calculations, we investigate adsorption properties and the diffusion mechanism of a Li atom on hydrogenated single-layer α- and β-silicene on a Ag(111) surface. It is found that a Li atom binds strongly on the surfaces of both α- and β-silicene, and it forms an ionic bond through the transfer of charge from the adsorbed atom to the surface. The binding energies of a Li atom on these surfaces are very similar. However, the diffusion barrier of a Li atom on H-α-Si is much higher than that on H-β-Si. The energy surface calculations show that a Li atom does not prefer to bind in the vicinity of the hydrogenated upper-Si atoms. Strong interaction between Li atoms and hydrogenated silicene phases and low diffusion barriers show that α- and β-silicene are promising platforms for Li-storage applications.Article Citation - WoS: 89Citation - Scopus: 94Effects of Li Substitution in Bi-2223 Superconductors(Springer Verlag, 2008) Bilgili, Özlem; Selamet, Yusuf; Kocabaş, KemalThe effects of Li substitution on the properties of high temperature superconductor Bi 17Pb 0.3Sr 2C 2Cu 3-x Li x O y were investigated. The samples were prepared by substituting Li (x=0.00-0.20) with changing ratios by a solid state reaction method. The samples were characterized by X-ray diffraction, DC electrical resistivity, AC magnetic susceptibility, and scanning electronic microscopy (SEM). The X-ray diffraction studies were done at room temperature and the lattice constants of the material were determined by indexing all the peaks observed. This study shows that there are two coexisting phases; high-T c (2223) phase and low-T c (2212) phase. The lattice structure of the material belongs to the orthorhombic unit cell. The volume fraction was estimated from the intensities of Bi-(2223) and Bi-(2212) phases. The sample with 20 wt% of added Li showed the higher volume fraction of Bi-(2223) phase formed (81%) compared to the other samples. The DC electrical resistivity of all the samples decreased as the wt% of Li increased. Both the onset critical temperatures T c (onset) and zero electrical resistivity critical temperatures T c (R=0) of the samples were determined from the DC electrical resistivity measurements. The observed value of the onset critical T c (onset) temperature was 110 K agreeing well with the magnetic susceptibility measurements. We obtained T c onset at 112 K from AC magnetic susceptibility measurements. © 2008 Springer Science+Business Media, LLC.