Chemical Engineering / Kimya Mühendisliği
Permanent URI for this collectionhttps://hdl.handle.net/11147/14
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Article Citation - WoS: 5Citation - Scopus: 5Evaluation of Liposomal and Microbubbles Mediated Delivery of Doxorubicin in Two-Dimensional (2d) and Three-Dimensional (3d) Models for Breast Cancer(Galenos Publishing House, 2021) Aydın,M.; Özdemir,E.; Altun,Z.; Kılıç,S.; Aktaş,S.Objective: Liposomal cancer treatment strategies are useful in removing the side effects that were the main concern in recent years. In this study, we prepared microbubble (MBs) conjugated with DOX-loaded liposomes (DOX-loaded MBs) and investigated their effectiveness in in vitro breast cancer cells in two dimensions (2D) and three dimensions (3D). Materials and Methods: With this aim, breast cancer cells with different features (4T1, MDA-MB231, MCF-7) were growth in 2D and 3D dimensions. The cytotoxic and cell death effects under different conditions, durations and doses were evaluated with WST-1, trypan-blue, colony counts. Apoptotic effects were investigated with flow cytometric Annexin-V-PI and immunohistochemical (Ki-67, caspase 3, 8, 9) methods. Results: After free DOX and LipoDOX were applied, the proliferation index of three cell lines reduced. Intrinsic and extrinsic apoptotic pathways were activated in both 2D and 3D models. However, this effect was observed at lower levels in the 3D model due to the difficulty of diffusion of DOX into the spheroids. Additionally, the suitability of the 3D model for breast cancer cells was supported by formation of ductus-like structures and spheroids. Cell deaths were not observed significantly with the DOX-loaded microbubbles due to rising of MBs to the surface and not reaching spheroids held in matrigel of 3D model. Conclusion: DOX and LipoDOX showed anti-proliferative and apoptosis-inducing effects in breast cancer cells. However, these effects indicated variability depending on the cell lines and 2D or 3D model types. ©Copyright 2021 by the the Turkish Federation of Breast Diseases Societies.Article Citation - WoS: 10Citation - Scopus: 9Bi̇yomalzemelerden İ̇zole Edi̇len Staphylococcus Epidermidis Suşlarinin Yüzey Özelli̇kleri̇ni̇n Beli̇rlenmesi̇(Ankara Mikrobiyoloji Derneği, 2010) Sudağıdan, Mert; Erdem, İlker; Çavuşoğlu, Cengiz; Çiftçioğlu, MuhsinThe surface properties of bacteria play an important role on adhesion to the biomaterial surface. In this study, the surface properties of Staphylococcus epidermidis strains isolated from clinically used polymeric biomaterial surfaces were investigated on the basis of zeta potential, hydrophobicity and surface topography. A total of 10 S.epidermidis strains isolated from intravenous catheters (n= 5), endotracheal tubes (n= 3) and central venous catheters (n= 2) which were used in the patients of pulmonary Intensive Care Unit, Ege University Medical Faculty Hospital, were included to the study. Seven of those isolates were biofilm producers, inhabiting biofilm genes, 2 were non-biofilm producers, however, inhabiting biofilm genes, and 1 was non-biofilm producer, inhabiting no biofilm genes. Zeta potential analysis have been performed in 3 different buffers (phosphate-buffered saline, 1 mM potassium chloride and 1 mM potassium phosphate buffer) and at different pH values (pH 4.1-8.2), in order to simulate in vivo environment of the biomaterials. Hydrophobicities of the strains were examined by bacterial adhesion to hydrocarbon (BATH) test and the surface topography of biofilms and slime layers were visualized by atomic force microscopy (AFM) and scanning electron microscopy (SEM) methods. It was found that all strains have negative zeta potential values (surface charge) in all buffers and pH values. In hydrophobicity analysis, the highest value (86%) was determined for non-biofilm forming S.epidermidis strain YT-169b (endotracheal tube isolate) and the lowest hydrophobicity (2.5%) was determined for biofilm forming S.epidermidis strain YT-212 (central venous catheter isolate). Biofilm and slime layers of the strains were imaginated by AFM and SEM analysis in ?m scale. SEM analysis showed that bacteria highly adhered to rough surfaces on biomaterial surfaces and the produced slime layers covered the surface of bacteria. In conclusion, elucidating the surface properties of opportunistic pathogens in different physiologic buffers will give important clues for the production of non-adhesive materials and antibacterial surfaces for those bacteria. It was also estimated that designing the surface of the biomaterial to have negative surface charge in the body and to be as smooth as possible will hamper biofilm formation.Article Citation - WoS: 14Xenograft Tumor Volume Measurement in Nude Mice: Estimation of 3d Ultrasound Volume Measurements Based on Manual Caliper Measurements(Dokuz Eylül Üniversitesi, 2020) Barış, Mustafa; Serinan, Efe; Çalışır, Meryem; Şimşek, Kürşat; Aktaş, Safiye; Yılmaz, Osman; Seçil, Mustafa; Kılıç Özdemir, SevgiObjectives: Volume measurement of subcutaneous xenograft tumors in nude mice models is an important metric to assess tumor growth or response to therapy. Manual calipers are widely used for this purpose. But the measurements with manual calipers may be inaccurate. Contrarily, three-dimensional (3D) ultrasonographic measurements give reliable and accurate tumor volume calculation. We aim to; evaluate the accuracy of common four formulas given in the literature to estimate xenograft tumor volumes based on manual caliper measurements and offer a new coefficient for a better estimation of the tumor volumes. Patients and Methods: Detailed manual diameter measurements of xenograft tumors were in 14 nude mice performed using Vernier caliper. Tumor volumes were calculated using the suggested formulas in the literature based on manual measurements. 3D ultrasound volume measurements were performed on same xenograft tumors using high resolution Vevo 2100 imaging system. To propose a new coefficient; means of ratio between manual and ultrasound volume measurement values were used. Also, data set was divided into two subgroups as tumor volume under 800 mm3 and over 800 mm3. New coefficients for each subgroup were defined. Results: Only with prolate ellipsoid formula there was no statistically significant difference between volume measurements with two methods (p=0,24). Our proposed formula (0,45 L*W*H) could estimate tumor volumes as good as prolate ellipsoid formula. Coefficient 0,35 and 0,81 in the same formula were found efficient in the selected subgroups. Conclusion: Using one common coefficient/formula for tumor volume estimation in any tumor size can be inaccurate. Appropriate coefficient should be chosen according to the dataset worked with.Article Citation - WoS: 3Validation on of Local Thermal Equilibrium and Uniform Pressure Assumptions for an Isobaric Adsorption Process in an Adsorbent Bed(Türk Isı Bilimi ve Tekniği Derneği, 2016) Gediz İliş, Gamze; Mobedi, Moghtada; Ülkü, SemraBu çalışmanın amacı, adsorbent yatakta ısı ve kütle transferini analiz etmek için kullanılan yerel ısıl denge ve sabit basınç yaklaşımı varsayımların geçerliliğini araştırmaktır. İçerisinde silika jel partikülleri içeren bir yatak ile su kabı olan bir deney düzeneği tasarlanmış ve adsorpsiyon sürecinde yatağın içinde farklı yerlerde yerel sıcaklık ve basınç ölçülmüştür. Ayrıca, sabit basınç yaklaşımı ve yerel ısıl denge varsayımlara dayalı ısı ve kütle transferi denklemleri çözülmüştür. Sayısal sonuçlar, ilgili deneysel sonuçlarla karşılaştırılmış ve aralarında oldukça iyi bir uyum tespit edilmiştir. Gerçekleştirilen karşılaştırmaya dayanarak, incelenen yatak için iki önemli sonuç şu şekildedir: a) katı madde ve su buharı arasında yerel ısıl denge bulunmaktadır, b) bir yatak içinde parçacıklar arası kütle transferi direnci ihmal edilebilir düzeyde olup konsantrasyonunun ve sıcaklığın belirlenmesi için sabit basınç yaklaşımı geçerlidir. Ayrıca, bu çalışmada sunulan deneysel sonuçlar diğer araştırmacıların sayısal çalışmalarının geçerliliğini doğtulamak için değerli veriler sağlayacaktır.Article Citation - WoS: 17Citation - Scopus: 19Heavy Naphtha Upgrading by Catalytic Reforming Over Novel Bi-Functional Zeolite Catalyst(Springer, 2018) Ahmedzeki, Nada S.; Al-Tabbakh, Ban A.; Antwan, Maher B.; Yılmaz, SelahattinNaphtha catalytic reforming process using bimetallic platinum and titanium loaded on nano synthesized HY zeolite was investigated for the product octane number enhancement. The activity of five samples of the prepared catalyst with different bimetallic loading of 0.13, 0.25 wt% Pt and 0.75, 1, 2.2 wt% Ti were investigated for Iraqi heavy naphtha catalytic reforming at the temperature range of 490, 500 and 510 degrees C and pressure of 10 bar in a packed bed pilot plant reactor. The best result of the research octane number was 84 for reformate product using the sample of 0.13% Pt-0.75% Ti%/HY zeolite at temperature 510 degrees C and 10 bar achieving 47% increase. All samples of the prepared catalyst showed a good stability during the operation at severe conditions and the maximum carbon content was about 9% due to the deposition of coke precursor on the catalyst surface. The reformate yield was investigated for all catalyst samples under 10 and 20 bars and the same range of temperature and ranged from 89 to 94%. These results are encouraging for future possible replacement of the conventional catalyst by the local synthetic zeolite. Octane number was correlated on the basis of constituent's boiling points. The maximum absolute error between the experimental and predicted octane number was about 3 and 5% using 10 and 20 bar respectively.Article Effective Synthesis of Cetyl Palmitate Over Co-Precipitated Wo3-Zro2 Catalysts(Springer Verlag, 2018) Mutlu, Vahide N.; Yılmaz, SelahattinThis study is focused on the development of solid acid catalysts for the synthesis of long chain fatty acids. A series of WO3-ZrO2 catalysts were prepared by co-precipitation method and tested in the synthesis of cetyl palmitate. The effect of WO3 loading (10, 15, and 20 wt% WO3) and calcination temperature (700 and 800 degrees C) on the catalyst properties and activity was investigated. XRD and Raman analysis confirmed that WO3 loading stabilized the tetragonal zirconia phase. Higher calcination temperature enhanced the acidities of the catalysts. WO3-ZrO2 catalysts were found to be very efficient for the synthesis of cetyl palmitate with high selectivity. These catalysts were tested for different reaction temperatures (135 and 162 degrees C), feed composition and catalyst amounts. The highest cetyl palmitate yield (98.4%) was obtained over the catalyst calcined at 800 degrees C with 15 wt% WO3, which had the highest total acidity. The catalysts preserved their activities up to three reuse.Article Citation - WoS: 18Citation - Scopus: 17Cnt Incorporated Polyacrilonitrile/Polypyrrole Nanofibers as Keratinocytes Scaffold(Trans Tech Publications, 2019) İnce Yardımcı, Atike; Aypek, Hande; Öztürk, Özgür; Yılmaz, Selahattin; Özçivici, Engin; Meşe, Gülistan; Selamet, YusufPolypyrrole (PPy) is an attractive scaffold material for tissue engineering with its non-toxic and electrically conductive properties. There has not been enough information about PPy usage in skin tissue engineering. The aim of this study is to investigate biocompatibility of polyacrilonitrile (PAN)/PPy nanofibrous scaffold for human keratinocytes. PAN/PPy bicomponent nanofibers were prepared by electrospinning, in various PPy concentrations and with carbon nanotube (CNT) incorporation. The average diameter of electrospun nanofibers decreased with increasing PPy concentration. Further, agglomerated CNTs caused beads and disordered parts on the surface of nanofibers. Biocompatibility of these PAN/PPy and PAN/PPy/CNT scaffolds were analyzed in vitro. Both scaffolds provided adhesion and proliferation of keratinocytes. Nanofiber diameter did not significantly influence the morphology of cells. However, with increasing number of cells, cells stayed among nanofibers and this affected their shape and size. In this study, we demonstrated that PAN/PPy and PAN/PPy/CNT scaffolds enabled the growth of keratinocytes, showing their biocompatibility.Article Citation - WoS: 5Citation - Scopus: 8A Research on the Production of Silk Sericin Powders by Using Spray Drying Method(Ege Üniversitesi, 2009) Genç, Gözde; Bayraktar, Oğuz; Başal, GüldemetSericin protein is usually discarded as a waste in silk industry. Production of silk sericin powders, which can be incorporated into fibers used in textile industry, by spray drying method will enable value-added utilization of waste sericin. in this study aqueous sericin solutions were used as raw material for the production of dry powders using a lab-scale spray dryer. A linear regression analyses were employed, in addition to experimental design at two levels with three factors for the analysis of three responses: moisture content, particle type and agglomeration degree. The process factors were the drying air temperature (120°C and 160°C), the feed rate (1.25x10-4 and 2.5x10-4 dms -), and the concentration of sericin solutions of 10% and 30% (w/w) fed to the spray dryer. The three responses were analyzed statistically to determine the effective parameters and it was concluded that moisture content depended on three factors-drying air temperature being the dominant parameter. Particle size and shape depended mainly on feed rate and agglomeration depended on the moisture content of the product.Article Citation - WoS: 11Citation - Scopus: 11Effect of Different Acidity Modifications on the Activity and Selectivity on H-Zsm5 Zeolites in N-Butene Isomerization(Springer Verlag, 2014) Kılıç, Emre; Yılmaz, SelahattinH-ZSM-5 was modified by silylation [tetraethylorthosilicate (TEOS) and triaminopropyltriethoxysilane], alkali (NaOH), acid (HCl) and ammoniumhexafluorosilicate (AHFS) treatments. The parent and modified zeolite forms were tested in n-butene isomerization. Modifications affected total acidities, the strength of the acid sites, pore sizes and surface areas of the H-ZSM-5 differently. The modifications decreased the conversion obtained by the parent catalyst. TEOS and alkali modifications did not promote formation of isobutene. Pre-alkali treatment before acid treatment increased selectivity to isobutene from 56.0 to 66.7 %, while conversion changed a little, it dropped from 52 to 50 %. AHFS modification provided the highest enhancement in selectivity to isobutene (87.5 %) for which n-butene conversion was dropped by about 10 % compared to H-ZSM-5. This was attributed to a slight modification of the pore size and to the reduction in strong and weak acid sites and generation of new Lewis acid sites.Article Kinetic and Structural Characterization of Interaction Between Trypsin and Equisetum Arvense Extract(Türk Biyokimya Derneği, 2014) Uslu, Mehmet Emin; Bayraktar, Oğuz; Ceylan, ÇağatayObjective: In this study the inhibitory effect of E. arvense extract on trypsin activity and the effect of trypsin on E. arvense extract were studied. In addition the nature of the interaction between the extract and trypsin was investigated. Methods: The inhibitory effect ethanol extract of E. arvense on trypsin activity was determined using trypsin enzyme assay. The structural effects of the extract-trypsin interaction for the extract were analyzed by FTIR. Finally, the HPLC analyses were carried out to analyze the individual components of the extract and the supernatant and soluble precipitate phases. Results: E. arvense extract was found to decrease total percent activity of trypsin to 5% in 24 hour at 24 °C. FTIR analyses indicated that the interaction between trypsin and E. arvense extract caused changes in the structure and hydrogen bonding behavior and composition of the extract proteins. These interactions also caused the extract lipids to accumulate in the insoluble precipitate phase. Most of the phenolics remained in the supernatant phase enhancing the inactivation of trypsin. However, the precipitated compounds were shown to be of apolar in nature as shown in the HPLC chromatograms. Conclusion: The methods that were used showed that the high phenolic content of E. arvense was the main reason for the inhibition of trypsin enzyme activity by denaturing the enzyme.