Chemistry / Kimya

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  • Conference Object
    Citation - WoS: 1
    Citation - Scopus: 1
    Biomimetic Peptide-Conjugated Membranes for Developing an Artificial Cornea
    (IEEE, 2022) Sunal, Gülşah; Pulat, Günnur; Akgün, İsmail Hakkı; Güven, Sinan; Yıldız, Ümit Hakan; Karaman, Ozan; Horzum, Nesrin
    The corneal endothelium is composed of a single layer of specialized endothelial cells, protecting, and nourishing the inner surface of the cornea. Corneal endothelial cells do not proliferate after birth and their number decrease with age. Trauma, inflammation, or surgical intervention can cause cell loss. When damage is extensive and the density of corneal endothelial cells decreases to a critical level, it results in corneal edema and vision loss. Besides them, when corneal endothelium has irreversible damage, the only treatment way is corneal transplantation. But there are some drawbacks such as finding donors, immune reactions, and the number of patients waiting on the transplantation lists for years. Tissue engineering approaches can provide promising alternatives for the regeneration of corneal endothelium tissue. Peptides can be used to modify and functionalize the scaffolds, allowing for the production of bioactive and biomimetic surfaces. Peptide-modified scaffold surfaces might direct and enhance the behaviors of cells. In this study, the aim was to functionalize the polycaprolactone (PCL) membranes with tissue-specific peptides and to characterize the peptide-conjugated membranes by Fourier-Transform Infrared Spectroscopy (FTIR), Scanning Electron Microscopy (SEM), and X-ray Photoelectron Spectroscopy (XPS) analysis. The synthesized peptides were successfully conjugated on the PCL biomembranes.
  • Article
    Citation - WoS: 8
    Citation - Scopus: 7
    Engineered Silica Nanoparticles Are Biologically Safe Vehicles To Deliver Drugs or Genes To Liver Cells
    (Elsevier Ltd., 2021) Tüncel, Özge; Kahraman, Erkan; Bağcı, Gülsün; Atabey, Neşe; Özçelik, Serdar
    Engineered silica nanoparticles (SiNP) are emerging materials for medical applications. Evaluating biological responses of specific cells treated with engineered silica nanoparticles is however essential. We synthesized and characterized the physicochemical properties of silica nanoparticles with two different sizes of 10 and 100 nm (10SiNP and 100SiNP) dispersed in cell culture medium. HuH-7, an epithelial-like human hepatoblastoma cell line and SK-HEP-1, a liver sinusoidal endothelial cell line (LSEC) are employed to evaluate their biological responses for the SiNP treatment. Primary human lymphocytes are used to assess genotoxicity recommended by OECD guidelines while erythrocytes are used to assess hemolytic activity. The engineered silica nanoparticles are not able to produce radical species, to alter the mitochondrial membrane potential, and induce any adverse effects on cell proliferation. The colony formation ability of HuH-7 hepatoblastoma cells was not affected following the SiNP treatment. Furthermore, SiNPs do not induce hemolysis of red blood cells and are not genotoxic. These findings suggest that SiNPs regardless of the size, amount, and incubation time are biologically safe vehicles to deliver drugs or genes to the liver. © 2020 Elsevier B.V.
  • Conference Object
    Effect of Some Physical, and Chemical Variables on Flocculation and Sediment Behaviour
    (A.A. Balkema Publishers, 2000) Polat, Hürriyet; Polat, Mehmet; İpekoğlu, Üner
    Effect of some chemical and physical variables on the settling rate, final sediment height, sediment viscosity and supernatant turbidity of a clay sample was studied using various polyacrylamide type flocculants. Increasing flocculant concentration significantly increased both the settling rate and sediment viscosity. More importantly, changes in the final sediment, height, hence the packing density, was minimal for all the conditions tested once the sediment was allowed to consolidate. Also, the mode of addition of the polymer, at once or continuous, did not seem to affect any of the parameters measured. Conditioning time seemed to alter the settling rate at low polymer concentrations, but had no effect at high polymer concentrations. However, increasing the conditioning time caused a decrease in the sediment viscosity. Different types of the polyacrylimides generated different settling rates at a given concentration, but the final sediment height was nearly independent of polymer type.
  • Conference Object
    Labeling of Gly-Gly With Technetium-99m and the Assessment of It's Radiopharmaceutical Potential
    (Springer Verlag, 2001) Taner, M.S.; Özdemir, Durmuş; Köseoğlu, K.; Argon, M.; Dirlik, A.; Duman, Y.
    [No abstract available]
  • Conference Object
    Citation - Scopus: 1
    Yapay Sindirim Sıvısında Doğal Zeolitlerde Meydana Gelen Morfolojik Değişmeler
    (Institute of Electrical and Electronics Engineers Inc., 2009) Demirbüker Kavak, Dilek; Özçelik, Serdar; Ülkü, Semra
    Doğal zeolitler biyoaktif maddelerdir. Doğal zeolitlerin hayvanlarda biyokütle arttırıcı besi katkı maddesi, insanlarda ülser tedavisinde mide asitliğini tamponlayıcı, asitliği düşürücü ilaç gibi değişik kullanım alanları mevcuttur. Değişik sağlık alanlarında kullanımlarından dolayı, zeolitlerin yapısal stabilitesinin sindirim sırasında belirlenmesi; olası olumlu veya olumsuz etkileşimleri anlamak açısından önem taşımaktadır. Gerçekleştirilen araştırmada, yapay sindirim sırasında zeolitte meydana gelebilecek olası morfolojik değişimlerin incelenmesi hedeflenmiştir. Bu amaçla zeolitin ABTS ile radikal sönümleme kapasitesi araştırılmış, yapay sindirim denemeleri gerçekleştirilerek de uygulama süreci sonrası yapıda olası değişimler ve adsorpsiyonlar taramalı elektron mikroskobu, FTIR, XRD analizleri ile incelenmiştir. 3g/100ml zeolitin ABTS radikalini %45 inhibe ettiği bulunmuştur. Taramalı elektron mikroskobu deneyleri sonucunda yapay sindirilmiş örneklerin yüzey morfolojisinde değişim gözlenmemiştir. Element analizleri yapısal kaybın olmadığını, Al ve Si elementlerinin ağırlıkça yüzdelerinin, kontrol örnekleriyle (Al:8.1; Si: 39) sindirilmiş örneklerde (Al:8.2; Si: 38.3) yaklaşık aynı olduğunu göstermiştir. Infrared spektrum (IR) ve X-ray ışını kırınımı analizleri sonuçları ise bu bulguları doğrulamıştır. Ayrıca taramalı elektron mikroskobu ve IR spektrum sonuçları yapay sindirim ortamındaki maddelerin, zeolit yüzeyinde adsorplanmadıklarıını göstermektedir. Sonuç olarak doğal zeolitler, yapay sindirim sırasında yapısal stabilitelerini kaybetmemektedirler.
  • Conference Object
    Citation - WoS: 1
    Citation - Scopus: 4
    Polymer Nanofiber-Carbon Nanotube Network Generating Circuits
    (SPIE, 2018) Mutlu, Mustafa Umut; Akın, Osman; Yıldız, Ümit Hakan
    The polymer nanofiber carbon nanotube (CNT) based devices attracts attention since they promise high performance for next generation devices such as wearable electronics, ultra-light weighted appliances and foldable devices. This abstract describes the utilization of polymer nanofibers and CNT as major component of low cost foldable photo-resistor. We use polymer nanofiber as template guiding CNTs to generate nanocircuits and conductive sensing network. The controlled combination of CNTs and polymer nanofibers provide opportunities for device miniaturization without loss of performance. The nanofiber-CNT network based photo-resistor exhibits broad band response 400 to 1600 nm that holding promises for ultra-thin devices and new sensing platforms.
  • Book Part
    Citation - WoS: 7
    Citation - Scopus: 14
    Olive Oil Adulteration With Sunflower and Corn Oil Using Molecular Fluorescence Spectroscopy
    (Elsevier Ltd., 2010) Öztürk, Betül; Arıkan, Aysun; Özdemir, Durmuş
    Adulteration of olive oil with cheaper substitutes such as sunflower and corn oil is a major concern for the public. Rapid analysis methods are required for a quick and easy screening of possible adulteration attempts. Fluorescence spectroscopy coupled with a genetic algorithm-based multivariate calibration method allows the determination of olive oil adulteration with sunflower and corn oil. Because the standard error of prediction values are all below 1.30% (w/w) for the ternary set, fluorescence spectroscopy can be used as a fast screening method for possible olive oil adulteration with cheaper vegetable oils. In addition, the genetic algorithm used in the genetic inverse least squares (GILS) method is able to select and extract the most relevant information to build successful calibration models that have high predictive ability for the independent test samples.
  • Article
    Citation - WoS: 5
    Citation - Scopus: 4
    Uv-Visible Spectrophotometric Quantitative Analysis of Ternary Mixture Using Multivariate Calibration Methods Optimized by a Genetic Algorithm
    (Syscom 18 SRL, 2010) Özdemir, Durmuş; Dinç, Erdal; Baleanu, Dimutru
    Simultaneous determination of ternary mixtures of caffeine, paracetamol and metamizol in commercial tablet formulations using UV-visible spectrophotometry combined with classical least squares (CLS) and genetic algorithm (GA) based multivariate calibration methods were demonstrated. The three genetic multivariate calibration methods are named as Genetic Classical Least Squares (GCLS), Genetic Inverse Least Squares (GILS) and Genetic Regression (GR). The GR method is based on a genetic algorithm based wavelength selection followed by a simple linear regression step whereas the GCLS and GILS are multivariate calibration methods modified by a wavelength selection principle using a genetic algorithm. The sample data set contains the UV-visible spectra of 47 synthetic mixtueres (4 to 48 μg/mL) and 16 tablets containing these components from two different producers. The spectra cover the range from 200 to 330 nm in 0.1 nm intervals. Several calibration models were built with the four methods for the three components. Overall, the standard error of calibration (SEC) and the standard error of prediction (SEP) for the synthetic data were in the range of 0.04 and 2.34 μg/mL for all the four methods. Predictive ability of the calibration models generated with synthetic samples was tested with actual tablet samples and results obtained from four methods were compared. The SEP values for the tablets were in the range of 0.31 and 15.44 mg/tablets.
  • Conference Object
    Kanser Öntanısı için Hücredışı Veziküller Kullanılarak Plazmonik Temelli Metodoloji Geliştirme
    (Institute of Electrical and Electronics Engineers Inc., 2017) Erdoğan, Duygu; Alduran, Yeşim; Yıldız, Ümit Hakan; Arslan Yıldız, Ahu
    Son yıllarda, vücut sıvılarında bulunan hücredışı veziküller kanserde tanı biyobelirteci olarak kullanılmaktadır. Veziküllerin içeriği kanserin türünü ve seviyesini belirlemede rol oynayabilmektedir. Bu vezikülleri yakalama işleminde, genel olarak, Akış Sitometrisi (Flow cytometry), Western Blot, Enzime-bağlı İmmunosorbent Deneyi (ELISA) ve Yüzey Plazmon Rezonansı (SPR) metodolojileri kullanılmaktadır. Bu çalışmada vezikülleri yakalamaya yönelik plazmon temelli bir deney platformu üretilmesi önerilmiştir. Bu plazmonik platform, yüzeyde yapılacak modifikasyonlarla, yüksek hassasiyet oluşturabileceğimiz Lokalize Yüzey Plazmon Resonansı temellidir.
  • Conference Object
    Üç Boyutlu Hücre Kültürü için Polimer Esaslı Ekstrasellüler Matriks Mimetiği
    (Institute of Electrical and Electronics Engineers Inc., 2017) Türker, Esra; Yıldız, Ümit Hakan; Arslan Yıldız, Ahu
    Elektro-eğirme metodu gelişmiş üretim teknolojilerindendir ve biyomedikal uygulamalarında yaygın olarak kullanılmaktadır. Özellikle doku mühendisliğinde amaç, çalışılacak doku üzerine doğal veya sentetik destek materyali (iskele) üreterek hücrenin uyum sağlayabileceği bir ortam oluşturmaktır. Bu projenin amacı üç boyutlu (3D) hücre kültürü çalışmaları için elektro-eğirme-metodu ile poli(L-laktik-co-epsilon-kaprolakton) (PLLCL) kullanılarak iskele üretilmesidir. Homojen lifler ve uygun gözenek boyutu elde etmek amacıyla optimizasyon çalışmaları yapılmıştır. Elde edilen liflerin çapı, akış hızı ve voltajın artmasıyla azalmaktadır. Taramalı uç elektron mikroskop incelemeleri (SEM) lif morfolojik yapılarının doku iskelesi fabrikasyonu için ideale yakın olduğunu ortaya çıkarmıştır.