Chemistry / Kimya
Permanent URI for this collectionhttps://hdl.handle.net/11147/4072
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Article Citation - WoS: 16Citation - Scopus: 18Cytotoxic and Cytostatic Side Effects of Chitosan Nanoparticles as a Non-Viral Gene Carrier(Elsevier Ltd., 2016) Bor, Gizem; Mytych, Jennifer; Zebrowski, Jacek; Wnuk, Maciej; Şanlı Mohamed, GülşahAlthough chitosan nanoparticles (CNs) became a promising tool for several biological and medical applications owing to their inherent biocompatibility and biodegradability features, studies regarding their effects on cytotoxic and cytostatic properties still remain insufficient. Therefore, in the present study, we decided to perform comprehensive analysis of the interactions between CNs–pKindling-Red-Mito (pDNA) and different cell line models derived from blood system and human solid tissues cancers. The resulting CNs-pDNA was investigated in terms of their cellular uptake, transfection efficiency, and physico-chemical, cytotoxic and cytostatic properties. The nanoparticles showed high encapsulation efficiency and physical stability for various formulations even after two days time period. Moreover, high gene expression levels were observed after 96 h of transfection. CNs-pDNA treatment, despite the absence of oxidative stress induction, caused cell cycle arrest in G0/G1 phase and as a consequence led to premature senescence which turned out to be both p21-dependent and p21-independent. Also, observed DNMT2 upregulation may suggest the activation of different pathways protecting from the results of CNs-mediated stress. In conclusion, treatment of different cell lines with CNs-pDNA showed that their biocompatibility was limited and the effects were cell type-dependent.Article Citation - WoS: 47Citation - Scopus: 49Simultaneous Identification of Spectral Properties and Sizes of Multiple Particles in Solution With Subnanometer Resolution(John Wiley and Sons Inc., 2016) Karabudak, Engin; Brookes, Emre; Lesnyak, Vladimir; Gaponik, Nikolai; Eychmüller, Alexander; Walter, Johannes; Segets, Doris; Peukert, Wolfgang; Wohlleben, Wendel; Demeler, Borries; Cölfen, HelmutWe report an unsurpassed solution characterization technique based on analytical ultracentrifugation, which demonstrates exceptional potential for resolving particle sizes in solution with sub-nm resolution. We achieve this improvement in resolution by simultaneously measuring UV/Vis spectra while hydrodynamically separating individual components in the mixture. By equipping an analytical ultracentrifuge with a novel multi-wavelength detector, we are adding a new spectral discovery dimension to traditional hydrodynamic characterization, and amplify the information obtained by orders of magnitude. We demonstrate the power of this technique by characterizing unpurified CdTe nanoparticle samples, avoiding tedious and often impossible purification and fractionation of nanoparticles into apparently monodisperse fractions. With this approach, we have for the first time identified the pure spectral properties and band-gap positions of discrete species present in the CdTe mixture.Article Citation - WoS: 15Citation - Scopus: 21Preparation, Characterization and Optimization of Chitosan Nanoparticles as Carrier for Immobilization of Thermophilic Recombinant Esterase(Taylor and Francis Ltd., 2011) İlgü, Hüseyin; Turan, Taylan; Şanlı Mohamed, GülşahImmobilization of biologically important molecules on myriad nano-sized materials has attracted great attention. Through this study, thermophilic esterase enzyme was obtained using recombinant DNA technology and purified applying one-step His-Select HF nickel affinity gel. The synthesis of chitosan was achieved from chitin by deacetylation process and degree of deacetylation was calculated as 89% by elemental analysis. Chitosan nanoparticles were prepared based on the ionic gelation of chitosan with tripolyphosphate anions. The physicochemical properties of the chitosan and chitosan nanoparticles were determined by several methods including SEM (Scanning Electron Microscopy), FT-IR (Fourier Transform Infrared Spectroscopy) and DLS (Dynamic Light Scattering). The morphology of chitosan nanoparticles was spherical and the nanospheres' average diameter was 75.3 nm. The purified recombinant esterase was immobilized efficiently by physical adsorption onto chitosan nanoparticles and effects of various immobilization conditions were investigated in details to develope highly cost-effective esterase as a biocatalyst to be utilized in biotechnological purposes. The optimal conditions of immobilization were determined as follows; 1.0 mg/mL of recombinant esterase was immobilized on 1.5 mg chitosan nanoparticles for 30 min at 60C, pH 7.0 under 100 rpm stirring speed. Under optimized conditions, immobilized recombinant esterase activity yield was 88.5%. The physicochemical characterization of enzyme immobilized chitosan nanoparticles was analyzed by SEM, FT-IR and AFM (Atomic Force Microscopy).Article Citation - WoS: 211Citation - Scopus: 246A Radiotracer Study of the Adsorption Behavior of Aqueous Ba2+ Ions on Nanoparticles of Zero-Valent Iron(Elsevier Ltd., 2007) Çelebi, O.; Üzüm, Çağrı; Shahwan, Talal.; Erten, Hasan NRecently, iron nanoparticles are increasingly being tested as adsorbents for various types of organic and inorganic pollutants. In this study, nanoparticles of zero-valent iron (NZVI) synthesized under atmospheric conditions were employed for the removal of Ba2+ ions in a concentration range 10-3 to 10-6 M. Throughout the study, 133Ba was used as a tracer to study the effects of time, concentration, and temperature. The obtained data was analyzed using various kinetic models and adsorption isotherms. Pseudo-second-order kinetics and Dubinin-Radushkevich isotherm model provided the best correlation with the obtained data. Observed thermodynamic parameters showed that the process is exothermic and hence enthalpy-driven.Article Citation - WoS: 45Polymers and Inorganics: a Happy Marriage?(Polymer Society of Korea, 2007) Wegner, Gerhard; Demir, Mustafa Muammer; Faatz, Michael; Gorna, Katazyrna; Munoz-Espi, Rafael; Guillemet, Baptiste; Gröhn, FranziskaThe most recent developments in two areas: (a) synthesis of inorganic particles with control over size and shape by polymer additives, and (b) synthesis of inorganic-polymer hybrid materials by bulk polymerization of blends of monomers with nanosized crystals are reviewed. The precipitations of inorganics, such as zinc oxide or calcium carbonate, in presence and under the control of bishydrophilic block or comb copolymers, are relevant to the field of Biomineralization. The application of surface modified latex particles, used as controlling agents, and the formation of hybrid crystals in which the latex is embedded in otherwise perfect crystals, are discussed. The formation of nano sized spheres of amorphous calcium carbonate, stabilized by surfactant-like polymers, is also discussed. Another method for the preparation of nanosized inorganic functional particles is the controlled pyrolysis of metal salt complexes of poly (acrylic acid), as demonstrated by the syntheses of lithium cobalt oxide and zinc/magnesium oxide. Bulk polymerization of methyl methacrylate blends, with for example, nanosized zinc oxide, revealed that the mechanisms of free radical polymerization respond to the presence of these particles. The termination by radical-radical interaction and the gel effect are suppressed in favor of degenerative transfer, resulting in a polymer with enhanced thermal stability. The optical properties of the resulting polymer-particle blends are addressed based on the basic discussion of the miscibility of polymers and nanosized particles.Article Citation - WoS: 30Citation - Scopus: 30Glycidyl-Methacry Late-Based Electrospun Mats and Catalytic Silver Nanoparticles(John Wiley and Sons Inc., 2008) Demir, Mustafa Muammer; Uğur, Gökçe; Gülgün, Mehmet A.; Menceloğlu, Yusuf Z.P(AN-GMA) and PGMA fibers coated with monodisperse silver nanoparticles have been prepared by a combination of electrospinning and electroless plating. The morphology of the electrospun fibers remains unchanged after surface hydrazination. Oxidation of hydrazine in an ammoniacal solution of AgNO 3 reduces and deposits silver atoms along the fiber surface, which then coalesce to Ag particles. The size of the silver nanoparticles is varied between 20-60 nm. Since the density of the active sites for silver reduction is lower in P(AN-GMA), a smaller particle size could be obtained. The catalytic activity of the silver nanoparticles has been confirmed.Article Citation - WoS: 15Aggregation of Fillers Blended Into Random Elastomeric Networks: Theory and Comparison With Experiments(John Wiley and Sons Inc., 2006) Demir, Mustafa Muammer; Menceloğlu, Yusuf Ziya; Erman, BurakA theoretical model describing aggregation of filler particles in amorphous elastomers is proposed. The model is based on a counting technique originally used in genome analysis to characterize the size and distribution of overlapping segments randomly placed on a DNA molecule. In the present model, the particles are first assumed to aggregate randomly upon mixing into the elastomer and then-sizes are calculated. The sizes and distributions of aggregates are also studied in the presence of attractive interparticle forces. Results of the proposed model are compared with experimental data on silica-filled end-linked poly(dimethyl-siloxane) networks. Comparison of the theory and experiment shows that the random aggregation assumption where no attractive forces exist between the particles is not valid and a significant attraction between the silica particles is needed in the theory to justify the experimental data obtained using atomic force microscopy. For filler content below 1.45 vol.-%, the model agrees, qualitatively, with experiment and shows the increase in cluster size with increasing amount of filler. It also explains the increase in the dispersion of aggregate sizes with increasing amount of filler.Article Citation - WoS: 64Citation - Scopus: 67Hierarchically Structured Metal Oxide/Silica Nanofibers by Colloid Electrospinning(American Chemical Society, 2012) Horzum Polat, Nesrin; Mun˜oz-Espí, Rafael; Glasser, Gunnar; Demir, Mustafa Muammer; Landfester, Katharina; Crespy, DanielWe present herein a new concept for the preparation of nanofibrous metal oxides based on the simultaneous electrospinning of metal oxide precursors and silica nanoparticles. Precursor fibers are prepared by electrospinning silica nanoparticles (20 nm in diameter) dispersed in an aqueous solution of poly(acrylic acid) and metal salts. Upon calcination in air, the poly(acrylic acid) matrix is removed, the silica nanoparticles are cemented, and nanocrystalline metal oxide particles of 4-14 nm are nucleated at the surface of the silica nanoparticles. The obtained continuous silica fibers act as a structural framework for metal oxide nanoparticles and show improved mechanical integrity compared to the neat metal oxide fibers. The hierarchically nanostructured materials are promising for catalysis applications, as demonstrated by the successful degradation of a model dye in the presence of the fibers.Article Citation - WoS: 2Citation - Scopus: 2Composites of Reactive Silica Nanoparticles and Poly(glycidyl Methacrylate) With Linear and Crosslinked Chains by in Situ Bulk Polymerization(Taylor and Francis Ltd., 2010) Demir, Mustafa Muammer; Altın, Burcu; Özçelik, SerdarComposites of poly(glycidyl methacrylate) (PGMA) and L-lysine-coated silica nanoparticles with varying contents were prepared by in situ bulk polymerization using benzoyl peroxide (BPO) as free radical initiator. Silica nanoparticles covered by L-lysine molecules were synthesized using emulsion method. Dynamic light scattering measurements confirmed that the particles are highly monodisperse with the diameter of 10 nm and free of aggregates in the monomer (glycidyl methacrylate, GMA). Upon polymerization of the homogeneous particle/monomer dispersion, aggregates of individual silica nanoparticles are observed by tapping mode atomic force microscope (AFM). Amine and/or carboxylic acid sites on particle surface covalently react with the oxirane groups of the polymer backbone. The aggregation was substantially suppressed by using a difunctional comonomer divinyl benzene (DVB) in polymerization. A three-dimensional polymer network, P(GMA-DVB), forms throughout the system. This structure leads to significant progress in particle dispersion, therefore in physical properties of the resulting composite. We demonstrated that the composites prepared by crosslinked chains are thermally more stable and mechanically stiffer than those prepared by linear ones.Article Citation - WoS: 15Citation - Scopus: 15Controlling Spontaneous Emission of Cdse Nanoparticles Dispersed in Electrospun Fibers of Polycarbonate Urethane(American Chemical Society, 2009) Demir, Mustafa Muammer; Soysal, Duygu; Ünlü, Caner; Kuş, Mahmut; Özçelik, SerdarLuminescent fibrous composite films consisting of submicrometer diameter fibers were prepared by electrospinning of segmented polycarbonate urethane (PCU) in dimethyl formamide and tri-n-octylphosphine oxide (TOPO)-capped CdSe nanocrystals (5 nm in diameter) in toluene. Using a pair of conductive electrodes separated with an air gap, we successfully produced randomly deposited and uniaxially aligned electrospun fibers. The surface structure of the electrospun fibers was studied using atomic force microscopy (AFM) and was compared to the corresponding film prepared by casting. In cast film, tapping mode AFM imaging suggests that hard urethane segments organize into rodlike morphology dispersed in soft polycarbonate. When PCU/ CdSe dispersions were subjected to electrospinning, copolymer domains were forced to arrange into lamella along the fiber axis due to elongational flow and high stretching. Molecular orientation in the domains of the composite fibers was confirmed by polarized infrared spectroscopy. We demonstrated that formation of the oriented domains by electrospinning develops a hierarchical structure, which consequently modifies spectral properties because new multiple sharp lines appeared in the photoluminescence (PL) spectra of the fibers. In contrast to randomly deposited fibers, the PL intensity of uniaxially aligned fibers was found to be angle dependent. We propose that the elongated internal structure within the fibers controls the spontaneous emission of CdSe nanoparticles dispersed throughout the electrospun mat. A discussion on the nature of the controlled spontaneous emission is provided.